RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TLCD1Q96CP7 247 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 NAF1Q96HR8 494 aaKnown RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 CAPZA3Q96KX2 299 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 RPRD1AQ96P16 312 aaPredicted RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 MCCC1Q96RQ3 725 aaPredicted RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 CCNL2Q96S94 520 aaPredicted RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 NPY6RQ99463 290 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 CHP1Q99653 195 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 RBM4BQ9BQ04 359 aaKnown RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 SLC39A3Q9BRY0 314 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 LRRN3Q9H3W5 708 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 TM9SF3Q9HD45 589 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 SIGLEC8Q9NYZ4 499 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 IL36GQ9NZH8 169 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 SENP1Q9P0U3 644 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 DHRS4-AS1Q9P1J3 65 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 TMCO1Q9UM00 188 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 L3MBTL1Q9Y468 752 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 HYOU1Q9Y4L1 999 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 PCNX3Q9H6A9 2034 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 MYH7BA7E2Y1 1941 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 MYH1P12882 1939 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 MROH7Q68CQ1 1323 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 TRAV9-2A0A087WT02 112 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 A0A1W2PPR1 153 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 GOLGA6L10A6NI86 522 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 ACOD1A6NK06 481 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 EFCAB7A8K855 629 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 SAP18O00422 153 aaKnown RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 FCN1O00602 326 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 SLC17A2O00624 439 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 TAPBPO15533 448 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 FCMRO60667 390 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 TSC22D2O75157 780 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 SH3BGRLO75368 114 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 LCA5LO95447 670 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 HOXD4P09016 255 aaPredicted RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 HSMCR30P0CW71 290 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 GDI1P31150 447 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 HNRNPH3P31942 346 aaKnown RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 ELK3P41970 407 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 RANBP1P43487 201 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 CCT3P49368 545 aaKnown RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 ACTR3P61158 418 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 KCNJ11Q14654 390 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 TP53I3Q53FA7 332 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 HSP90AA4PQ58FG1 418 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 OR52E8Q6IFG1 317 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 C8orf74Q6P047 294 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 MCOLN2Q8IZK6 566 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 CLEC4FQ8N1N0 589 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 DEFB123Q8N688 67 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 CSNK1A1LQ8N752 337 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 OR56B2PQ8NGI1 322 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 LZICQ8WZA0 190 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 CHMP6Q96FZ7 201 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 GSDMAQ96QA5 445 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 XPO6Q96QU8 1125 aaKnown RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 PPDPFQ9H3Y8 114 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 DMAP1Q9NPF5 467 aaPredicted RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 FANCFQ9NPI8 374 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 PNO1Q9NRX1 252 aaKnown RBP5.81□□□□□ -1.48
LSM1-202ENST00000520286 RASD1Q9Y272 281 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 MYH2Q9UKX2 1941 aa5.81□□□□□ -1.48
LSM1-202ENST00000520286 CNTNAP2Q9UHC6 1331 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 FAM240BA0A1B0GVZ2 78 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 HELTA6NFD8 242 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SMIM24O75264 130 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 KBTBD11O94819 623 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SLC2A10O95528 541 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 IGHV3-13P01766 116 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 PIGRP01833 764 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 CD55P08174 381 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 LAMP1P11279 417 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SERPINA2P20848 420 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 LIM2P55344 173 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 RPS8P62241 208 aaKnown RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 UAP1Q16222 522 aaPredicted RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 MRGPRG-AS1Q2M3A8 158 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SERPINA9Q86WD7 417 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 HIPK1Q86Z02 1210 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SLC22A9Q8IVM8 553 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 MAIP1Q8WWC4 291 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 NR4A3Q92570 626 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 KIFAP3Q92845 792 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 PPP1R16AQ96I34 528 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 TPD52L3Q96J77 140 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 RBM14Q96PK6 669 aaKnown RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 LZTS2Q9BRK4 669 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 TIPINQ9BVW5 301 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 TRIM4Q9C037 500 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 BOLA2Q9H3K6 86 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 GLIPR2Q9H4G4 154 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 SGK2Q9HBY8 427 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 ADAM22Q9P0K1 906 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 WRAP73Q9P2S5 460 aaPredicted RBP5.8□□□□□ -1.48
LSM1-202ENST00000520286 RWDD2AQ9UIY3 292 aa5.8□□□□□ -1.48
LSM1-202ENST00000520286 POLDIP2Q9Y2S7 368 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms