RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CLEC6AQ6EIG7 209 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 OR52E8Q6IFG1 317 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 C16orf54Q6UWD8 224 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 HSDL2Q6YN16 418 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 EXOC3L1Q86VI1 746 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 NUDCD3Q8IVD9 361 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 ST13P4Q8IZP2 240 aaPredicted RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 POC5Q8NA72 575 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 APCDD1LQ8NCL9 501 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 OR4K14Q8NGD5 310 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 BBS10Q8TAM1 723 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 RIT1Q92963 219 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 UCN3Q969E3 161 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 NCLNQ969V3 563 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 MOAP1Q96BY2 351 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 TM4SF18Q96CE8 201 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 SNRNP40Q96DI7 357 aaKnown RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 SENP5Q96HI0 755 aaPredicted RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 NPAS2Q99743 824 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 UTP23Q9BRU9 249 aaKnown RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 PELOQ9BRX2 385 aaKnown RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 FAIM2Q9BWQ8 316 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 OR8D2Q9GZM6 311 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 RRAGDQ9NQL2 400 aaPredicted RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 COPS7AQ9UBW8 275 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 PSME2Q9UL46 239 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 LRP12Q9Y561 859 aa6.21□□□□□ -1.42
SDCBP-208ENST00000520228 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.21□□□□□ -1.42
SDCBP-208ENST00000520228 COL6A6A6NMZ7 2263 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 GABRR3A8MPY1 467 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 SLC28A1O00337 649 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 CTDSP2O14595 271 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 TM9SF1O15321 606 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 BIRC5O15392 142 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 PCDH7O60245 1069 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZWINTO95229 277 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 CHRNGP07510 517 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 FGF4P08620 206 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ANXA4P09525 319 aaPredicted RBP6.2□□□□□ -1.42
SDCBP-208ENST00000520228 NEFHP12036 1026 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 SERPINB5P36952 375 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 CYB561P49447 251 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 MLF1P58340 268 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 OR1C1Q15619 314 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 TNFAIP8L3Q5GJ75 292 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 SPINK14Q6IE38 97 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 SLC48A1Q6P1K1 146 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF704Q6ZNC4 412 aaPredicted RBP6.2□□□□□ -1.42
SDCBP-208ENST00000520228 DGAT2L6Q6ZPD8 337 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZCCHC23Q6ZST2 131 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 CLYBLQ8N0X4 340 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF321PQ8N8H1 164 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 OR5L2Q8NGL0 311 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 OR8K3Q8NH51 312 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 DOK4Q8TEW6 326 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 C19orf60Q96EN9 201 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 PKNOX2Q96KN3 472 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ART5Q96L15 291 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 EBPLQ9BY08 206 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 EVA1AQ9H8M9 152 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 AGPAT4Q9NRZ5 378 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ASF1BQ9NVP2 202 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 KLHL9Q9P2J3 617 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF223Q9UK11 482 aaPredicted RBP6.2□□□□□ -1.42
SDCBP-208ENST00000520228 CES1P1Q9UKY3 287 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 TMEM5Q9Y2B1 443 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 B3GALT5Q9Y2C3 310 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 FIS1Q9Y3D6 152 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF780BQ9Y6R6 833 aa6.2□□□□□ -1.42
SDCBP-208ENST00000520228 PRRC2CQ9Y520 2896 aaKnown RBP6.2□□□□□ -1.42
SDCBP-208ENST00000520228 HMGB1P1B2RPK0 211 aaPredicted RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 WWP2O00308 870 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 ZNHIT1O43257 154 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 PRKNO60260 465 aaPredicted RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 SEC22BO75396 215 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 ERAL1O75616 437 aaKnown RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 OR2J2O76002 312 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 RSL1D1O76021 490 aaKnown RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 HSPA4LO95757 839 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 IGKV3-11P04433 115 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 SERPINE1P05121 402 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 IL3P08700 152 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 LINC00032P0C843 101 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 FAM106CPP0CH98 169 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 CPMP14384 443 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 CSNK2A2P19784 350 aaPredicted RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 TIA1P31483 386 aaKnown RBP eCLIP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 FEN1P39748 380 aaKnown RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 HLCSP50747 726 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 SSR4P51571 173 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 ERVFC1-1P60608 527 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 MAGOHP61326 146 aaKnown RBP6.19□□□□□ -1.42
SDCBP-208ENST00000520228 ERVK-8P63133 956 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 CASP8Q14790 479 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 HEPACAMQ14CZ8 416 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 CHI3L2Q15782 390 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 UGT3A2Q3SY77 523 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 HHATQ5VTY9 493 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 NOXRED1Q6NXP6 359 aa6.19□□□□□ -1.42
SDCBP-208ENST00000520228 RPUSD3Q6P087 351 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms