RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 DDX31Q9H8H2 851 aaKnown RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 ELF5Q9UKW6 265 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 FADS1O60427 444 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 NPPBP16860 134 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 AQP2P41181 271 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 HOXA1P49639 335 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 PDX1P52945 283 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 YPEL5P62699 121 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 TMPRSS12Q86WS5 348 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 LINC00518Q8N0U6 118 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 ZMYND19Q96E35 227 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 CAMK2AQ9UQM7 478 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 FAM227AF5H4B4 570 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 CASC3O15234 703 aaKnown RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 ETV5P41161 510 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 RAB13P51153 203 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 TRA2BP62995 288 aaKnown RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 OR5M10Q6IEU7 315 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 MAMDC2Q7Z304 686 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-213ENST00000514442 OR8J2Q8NGG1 315 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 MFSD8Q8NHS3 518 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 BTBD2Q9BX70 525 aa12.19□□□□□ -0.46
TCOF1-213ENST00000514442 TMEM129A0AVI4 362 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ZAR1LA6NP61 321 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 RGS19P49795 217 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 RNF212Q495C1 297 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 OLIG3Q7RTU3 272 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 CYB5R1Q9UHQ9 305 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 PTRH2Q9Y3E5 179 aaKnown RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 NUP205Q92621 2012 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 A6NCN8 305 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 GPR75O95800 540 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 P04436 131 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ACVR1Q04771 509 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ABCA11PQ4W5N1 156 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 H3F3CQ6NXT2 135 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 PODNL1Q6PEZ8 512 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 FAM111BQ6SJ93 734 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 PAQR6Q6TCH4 344 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SDR9C7Q8NEX9 313 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 APH1BQ8WW43 257 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 GPR137Q96N19 417 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 VRK1Q99986 396 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 MS4A8Q9BY19 250 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SNRNP70P08621 437 aaKnown RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 AKAIN1P0CW23 69 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SNRPBP14678 240 aaKnown RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SHC1P29353 583 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ADPRHP54922 357 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 COX20Q5RI15 118 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 Q6ZNB5 142 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 LRRC56Q8IYG6 542 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 FAM160A2Q8N612 972 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 C19orf47Q8N9M1 422 aaKnown RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SYNPRQ8TBG9 265 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 PRRC1Q96M27 445 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 MRI1Q9BV20 369 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 C1QTNF3Q9BXJ4 246 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 OBP2AQ9NY56 170 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SPHK1Q9NYA1 384 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 DHDHQ9UQ10 334 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 TRAV27A0A087WT01 109 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 A8MVJ9 347 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 SIGLEC6O43699 453 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 FURINP09958 794 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 NKX6-1P78426 367 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-213ENST00000514442 REEP5Q00765 189 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ZNF674Q2M3X9 581 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ENTPD8Q5MY95 495 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 EEF1A1P5Q5VTE0 462 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 OR1E3Q8WZA6 343 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 DCUN1D4Q92564 292 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ELSPBP1Q96BH3 223 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 ATF6BQ99941 703 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 IER3IP1Q9Y5U9 82 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 MCM3APO60318 1980 aa12.18□□□□□ -0.46
TCOF1-213ENST00000514442 MAS1P04201 325 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 HBQ1P09105 142 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 FUT1P19526 365 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 CCR9P51686 369 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ACTBP60709 375 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ACTG1P63261 375 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ZP2Q05996 745 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 BEX5Q5H9J7 111 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ULK3Q6PHR2 472 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 NECAB3Q96P71 396 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-213ENST00000514442 C6orf106Q9H6K1 298 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-213ENST00000514442 CXorf36Q9H7Y0 433 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 CUTCQ9NTM9 273 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ZNF443Q9Y2A4 671 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-213ENST00000514442 SIT1Q9Y3P8 196 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 AGAP14A8MT82 685 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 NDUFB2O95178 105 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 VNN2O95498 520 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 BCL6P41182 706 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ZNF84P51523 738 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 RBMS2Q15434 407 aaKnown RBP12.17□□□□□ -0.46
TCOF1-213ENST00000514442 SSX1Q16384 188 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 TMEM200AQ86VY9 491 aa12.17□□□□□ -0.46
TCOF1-213ENST00000514442 ZC3HAV1LQ96H79 300 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms