RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 AQP1P29972 269 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GPX4P36969 197 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GPR143P51810 404 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PER3P56645 1201 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SNRPEP62304 92 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 HEPACAMQ14CZ8 416 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 AANATQ16613 207 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MEP1AQ16819 746 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PXKQ7Z7A4 578 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 BOLLQ8N9W6 283 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 C16orf52Q8NHV5 167 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 WDR20Q8TBZ3 569 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GCDHQ92947 438 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 FKBP10Q96AY3 582 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 TM4SF18Q96CE8 201 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ROPN1BQ9BZX4 212 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OR10A5Q9H207 317 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF556Q9HAH1 456 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ROPN1Q9HAT0 212 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CTPS2Q9NRF8 586 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CCDC167Q9P0B6 97 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ITPR3Q14573 2671 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 KCNE1BA0A087WTH5 132 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 TRAV17A0A0B4J275 112 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 FITM1A5D6W6 292 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 PRR23D1E9PI22 279 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 SUV39H1O43463 412 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 WISP3O95389 354 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 NTN1O95631 604 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 C6orf47O95873 294 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 C1QCP02747 245 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 ERCC1P07992 297 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 PRR23D2P0DMB1 279 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 LAMP1P11279 417 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 PSMD4P55036 377 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 NXNL2Q5VZ03 156 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 CDC73Q6P1J9 531 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 EPHX4Q8IUS5 362 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 GCNT2Q8N0V5 402 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF561Q8N587 486 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 CLRN3Q8NCR9 226 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 RBPMSQ93062 196 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 ANKRD9Q96BM1 317 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 CCDC126Q96EE4 140 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 RASL10BQ96S79 203 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 DPY30Q9C005 99 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 WDR54Q9H977 334 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 NANOGQ9H9S0 305 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 C1orf109Q9NX04 203 aa7.21□□□□□ -1.25
LIMCH1-219ENST00000514096 UNC79Q9P2D8 2635 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ASH1LQ9NR48 2969 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 VSTM2BA6NLU5 285 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 BET1O15155 118 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 GATBO75879 557 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 CSNK2A2P19784 350 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 HOXC12P31275 282 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 TIA1P31483 386 aaKnown RBP eCLIP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 PPIAP62937 165 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SKP2Q13309 424 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 MFSD13AQ14CX5 517 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 NDUFAF6Q330K2 333 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 STEAP3Q658P3 488 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 KLBQ86Z14 1044 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SULF2Q8IWU5 870 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF595Q8IYB9 648 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 RPRMLQ8N4K4 120 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 OR6F1Q8NGZ6 308 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF354BQ96LW1 612 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF382Q96SR6 550 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 NPAS2Q99743 824 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 PIGQQ9BRB3 760 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 GPR61Q9BZJ8 451 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 KRT84Q9NSB2 600 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 VAPAQ9P0L0 249 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 KLHL9Q9P2J3 617 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 MYOTQ9UBF9 498 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SEC14L4Q9UDX3 406 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SEC14L3Q9UDX4 400 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC23A1Q9UHI7 598 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 LOC110117498-PIK3R3F6TDL0 507 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 H0YIV9 168 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 H3BML4 177 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC22A5O76082 557 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 UROSP10746 265 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 BCKDHAP12694 445 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF35P13682 527 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 AHCYP23526 432 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 CHI3L1P36222 383 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 HTR3AP46098 478 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 TNFSF10P50591 281 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF81P51508 661 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 RAB2AP61019 212 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ELAVL1Q15717 326 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 Q6ZSR9 355 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 LRRC25Q8N386 305 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 YIPF7Q8N8F6 280 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 Q8NA96 180 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 COQ8AQ8NI60 647 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 IP6K3Q96PC2 410 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms