RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FBXO44Q9H4M3 255 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM38AQ9H6F2 299 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 CCDC86Q9H6F5 360 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 PRSS21Q9Y6M0 314 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF236Q9UL36 1845 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 A0A0G2JMZ2 1700 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 LRRC37A2A6NM11 1700 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 LRRC37AA6NMS7 1700 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 CPSF4LA6NMK7 179 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 A6NNC1 897 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF705GA8MUZ8 300 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SAP18O00422 153 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 HYAL3O43820 417 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FKTNO75072 461 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FAUP35544 74 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 PRKXP51817 358 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 OR12D2P58182 307 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SMIM11AP58511 58 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SAPCD1Q5SSQ6 148 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 AKR1C8PQ5T2L2 129 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FAM151BQ6UXP7 276 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 LINGO4Q6UY18 593 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 TMPRSS11FQ6ZWK6 438 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM19Q96HH6 336 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FAM46AQ96IP4 442 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 C4orf36Q96KX1 117 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 NDUFAF3Q9BU61 184 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SPON2Q9BUD6 331 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 POFUT1Q9H488 388 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 PLEKHA1Q9HB21 404 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ASCL3Q9NQ33 180 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 A8MWP6 167 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 PIRO00625 290 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 DLEU1O43261 78 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 RAMP2O60895 175 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ETHE1O95571 254 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 NTSP30990 170 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 GLO1Q04760 184 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ZBTB6Q15916 424 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 MST1LQ2TV78 715 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 IER5LQ5T953 404 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 METTL7BQ6UX53 244 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 NPSR1Q6W5P4 371 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 LANCL3Q6ZV70 420 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 THNSL2Q86YJ6 484 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 GPR137CQ8N3F9 429 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FRMD1Q8N878 549 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 OR6K2Q8NGY2 324 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 CD300LFQ8TDQ1 290 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC38A5Q8WUX1 472 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SPATA33Q96N06 139 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 NDC1Q9BTX1 674 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC23A2Q9UGH3 650 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 NUMA1Q14980 2115 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 FAM86C2PA6NEL3 165 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 OR52A4PA6NMU1 304 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 GPR32O75388 356 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SOD3P08294 240 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 GTF2F2P13984 249 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 CDK2P24941 298 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 CSNK1DP48730 415 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SULT1A1P50225 295 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZXDCQ2QGD7 858 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RNASE10Q5GAN6 216 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 PRAMEF17Q5VTA0 474 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF529Q6P280 563 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 LRRC56Q8IYG6 542 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 C19orf47Q8N9M1 422 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 JSRP1Q96MG2 331 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 TAAR9Q96RI9 348 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 DDA1Q9BW61 102 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 MRIQ9BWK5 157 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RAB33BQ9H082 229 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 FAM86C1Q9NVL1 165 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SEC14L6B5MCN3 397 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 EEF1E1-BLOC1S5C9J1V9 151 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ACOT7O00154 380 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 IGHA1P01876 353 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 MT-ND5P03915 603 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 CD74P04233 296 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SPARCP09486 303 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF7P17097 686 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RAB6AP20340 208 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 TSPAN31Q12999 210 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF345Q14585 488 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 GPNMBQ14956 572 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 C14orf28Q4W4Y0 310 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM31Q5JXX7 168 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 COL13A1Q5TAT6 717 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 NKAIN2Q5VXU1 208 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ENPP7Q6UWV6 458 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SERPINA9Q86WD7 417 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 FBXO16Q8IX29 292 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 JAGN1Q8N5M9 183 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 OR6J1Q8NGC5 347 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 OR10AD1Q8NGE0 317 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZCCHC10Q8TBK6 192 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 NUDCD2Q8WVJ2 157 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RAB24Q969Q5 203 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 PARP12Q9H0J9 701 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms