RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PRKCDQ05655 676 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 FOXF2Q12947 444 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 PMS2P3Q13401 168 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 TMEM225Q6GV28 225 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 TMEM211Q6ICI0 200 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 PAQR6Q6TCH4 344 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 HIST3H2AQ7L7L0 130 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 SLC46A3Q7Z3Q1 461 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 NANOGNBQ7Z5D8 188 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 AMIGO2Q86SJ2 522 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 GPAT4Q86UL3 456 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 CCDC71Q8IV32 467 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 C10orf67Q8IYJ2 551 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 RNF113BQ8IZP6 322 aaKnown RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 KDM8Q8N371 416 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 NAXEQ8NCW5 288 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 OR9Q2Q8NGE9 314 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 OR6S1Q8NH40 331 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 MBD3L2Q8NHZ7 208 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 RND1Q92730 232 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 HIST1H2ACQ93077 130 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 ZNF775Q96BV0 537 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 CCDC120Q96HB5 630 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 SEMA6AQ9H2E6 1030 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 FKRPQ9H9S5 495 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 RNF122Q9H9V4 155 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 CHST11Q9NPF2 352 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 KRCC1Q9NPI7 259 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 NANSQ9NR45 359 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 ERRFI1Q9UJM3 462 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 SLC5A6Q9Y289 635 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 KIAA1549Q9HCM3 1950 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 A0A0G2JNJ9 132 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 C11orf98E9PRG8 122 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 BLOC1S5-TXNDC5H3BN57 136 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 H3BNX3 289 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 CYTIPO60759 359 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 DEAF1O75398 565 aaPredicted RBP10.61□□□□□ -0.71
CUX1-210ENST00000497815 SERPINI2O75830 405 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 RCBTB2O95199 551 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 OR6A2O95222 327 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 TMIGD3P0DMS9 266 aaPredicted RBP10.61□□□□□ -0.71
CUX1-210ENST00000497815 FCGR1AP12314 374 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 AHCYP23526 432 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 TIMP3P35625 211 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 HMGA2P52926 109 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 CTBP2P56545 445 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 H3F3AP84243 136 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 ADORA2A-AS1P86434 159 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 RASGEF1BQ0VAM2 473 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 MFSD13AQ14CX5 517 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 RNPS1Q15287 305 aaKnown RBP10.61□□□□□ -0.71
CUX1-210ENST00000497815 ATP6AP1Q15904 470 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 RIPPLY2Q5TAB7 128 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 GTF2IRD2BQ6EKJ0 949 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 ABLIM2Q6H8Q1 611 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 OR2A2Q6IF42 318 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 ZFP1Q6P2D0 407 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 H1FNTQ75WM6 255 aaPredicted RBP10.61□□□□□ -0.71
CUX1-210ENST00000497815 TMEM179BQ7Z7N9 219 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 GTF2IRD2Q86UP8 949 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 SLC43A2Q8N370 569 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 CNEP1R1Q8N9A8 125 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 OR13C2Q8NGS9 318 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 OR5J2Q8NH18 312 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 S100A14Q9HCY8 104 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 MRPL39Q9NYK5 338 aaKnown RBP10.61□□□□□ -0.71
CUX1-210ENST00000497815 KLHL9Q9P2J3 617 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 Q9UFV3 132 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 ZNF229Q9UJW7 825 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 TMEM5Q9Y2B1 443 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 CORINQ9Y5Q5 1042 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 SVILO95425 2214 aa10.61□□□□□ -0.71
CUX1-210ENST00000497815 ZNF462Q96JM2 2506 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 DNAJC13O75165 2243 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 TRAV27A0A087WT01 109 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 ZNF716A6NP11 495 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 HSPB2A8KAH6 182 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 PLPP3O14495 311 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 CDC42EP2O14613 210 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 ZG16O60844 167 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 AGFG2O95081 481 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 HPRP00739 348 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 ASAH2BP0C7U1 165 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 ADORA3P0DMS8 318 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 POU2F1P14859 743 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 DNAJA1P31689 397 aaKnown RBP10.6□□□□□ -0.71
CUX1-210ENST00000497815 CEACAM8P31997 349 aaPredicted RBP10.6□□□□□ -0.71
CUX1-210ENST00000497815 IFNGR2P38484 337 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 AQP2P41181 271 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 OMPP47874 163 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 P2RY4P51582 365 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 C1DQ13901 141 aaKnown RBP10.6□□□□□ -0.71
CUX1-210ENST00000497815 HSPB2Q16082 182 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 MICAQ29983 383 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 TMEM201Q5SNT2 666 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 HMBOX1Q6NT76 420 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 PGBD2Q6P3X8 592 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 TMPRSS11FQ6ZWK6 438 aa10.6□□□□□ -0.71
CUX1-210ENST00000497815 ZER1Q7Z7L7 766 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms