RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HMGCS2P54868 508 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 ERVPABLB-1P60509 514 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 RAB10P61026 200 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 MRPS22P82650 360 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 LTB4RQ15722 352 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 NHLRC3Q5JS37 347 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF506Q5JVG8 444 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 C22orf42Q6IC83 251 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 LINC00523Q86TU6 105 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 C9orf40Q8IXQ3 194 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 OR9G4Q8NGQ1 327 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 FGF11Q92914 225 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 SEC22AQ96IW7 307 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 NOL4LQ96MY1 436 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 MRPL45Q9BRJ2 306 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 FGFBP2Q9BYJ0 223 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 SPRR3Q9UBC9 169 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 PLLPQ9Y342 182 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 IFT140Q96RY7 1462 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 A0A1B0GWB2 263 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 DCTN6O00399 190 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 HUS1O60921 280 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 NPPAP01160 153 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 LAMP1P11279 417 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 GATA1P15976 413 aaPredicted RBP3.71□□□□□ -1.81
VPS13A-212ENST00000493341 BCKDHBP21953 392 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 PTGDSP41222 190 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 TMED10P49755 219 aaKnown RBP3.71□□□□□ -1.81
VPS13A-212ENST00000493341 DGUOKQ16854 277 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 SAMD4BQ5PRF9 694 aaKnown RBP3.71□□□□□ -1.81
VPS13A-212ENST00000493341 UFSP1Q6NVU6 142 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 NRMQ8IXM6 262 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 MS4A15Q8N5U1 240 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 OR6T1Q8NGN1 323 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 C19orf60Q96EN9 201 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 MS4A4EQ96PG1 132 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 MCRIP2Q9BUT9 160 aaKnown RBP3.71□□□□□ -1.81
VPS13A-212ENST00000493341 ELOVL4Q9GZR5 314 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 MMP24Q9Y5R2 645 aa3.71□□□□□ -1.81
VPS13A-212ENST00000493341 MBTPS2O43462 519 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 AIREO43918 545 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 ERLIN2O94905 339 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 PLEKP08567 350 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 MELTFP08582 738 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 GCKP35557 465 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 NAA10P41227 235 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 ARRB1P49407 418 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 GPM6AP51674 278 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 XIAPP98170 497 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 FCHO2Q0JRZ9 810 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 SERTAD2Q14140 314 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 GNMTQ14749 295 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 HNRNPA1L2Q32P51 320 aaKnown RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 Q6ZSR3 168 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 TMUB2Q71RG4 321 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 TRIML2Q8N7C3 387 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 Q8N9P0 234 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 C8orf44Q96CB5 159 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 CMTM7Q96FZ5 175 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 GAL3ST1Q99999 423 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 IL22Q9GZX6 179 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 ADNPQ9H2P0 1102 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 CTSZQ9UBR2 303 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 N6AMT1Q9Y5N5 214 aa3.71□□□□□ -1.82
VPS13A-212ENST00000493341 BZW2Q9Y6E2 419 aaKnown RBP3.71□□□□□ -1.82
VPS13A-212ENST00000493341 LOC100506127A0A0U1RQW1 187 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SMIM28A0A1B0GU29 152 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 A0A1W2PPV4 95 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 IFITM10A6NMD0 228 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SLC17A2O00624 439 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SOCS3O14543 225 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 LALBAP00709 142 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 VDAC1P21796 283 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SLC2A5P22732 501 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 IGHV1-2P23083 117 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 HSD17B2P37059 387 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF829Q3KNS6 432 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 NSUN5P1Q3KNT7 163 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 Q3ZCU0 254 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 PPM1LQ5SGD2 360 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 GPRC6AQ5T6X5 926 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SLC25A48Q6ZT89 311 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 CSGALNACT2Q8N6G5 542 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 DTX3LQ8TDB6 740 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 PYROXD1Q8WU10 500 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MITD1Q8WV92 249 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 VOPP1Q96AW1 172 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 TMIGD2Q96BF3 282 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 HSFY1Q96LI6 401 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MCCC1Q96RQ3 725 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 RBM4BQ9BQ04 359 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ACTR6Q9GZN1 396 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 RACGAP1Q9H0H5 632 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 FGF20Q9NP95 211 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SCRT2Q9NQ03 307 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ASIC3Q9UHC3 531 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 EIF4G3O43432 1585 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 TRAV9-2A0A087WT02 112 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 NSG1A0A0A6YYJ2 146 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 LOC100653049A0A140TA62 436 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms