RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SLC43A2Q8N370 569 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 C10orf53Q8N6V4 93 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 C19orf47Q8N9M1 422 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 ZNF511Q8NB15 262 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 OR11H4Q8NGC9 324 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 C3orf49Q96BT1 292 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 Q96M85 177 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 OR10A5Q9H207 317 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 ZFP64Q9NPA5 681 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 ANKRD10Q9NXR5 420 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 NKIRAS2Q9NYR9 191 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 ZNF337Q9Y3M9 751 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 PCDHGA9Q9Y5G4 932 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 LRP4O75096 1905 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 RPP14O95059 124 aaKnown RBP16.41■□□□□ 0.22
VIM-206ENST00000487938 IFNA16P05015 189 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 IGHV4-34P06331 123 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 H2AFB2P0C5Z0 115 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 AQP2P41181 271 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 CDKN2AP42771 156 aaKnown RBP16.41■□□□□ 0.22
VIM-206ENST00000487938 ST3GAL2Q16842 350 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 SFRP4Q6FHJ7 346 aaPredicted RBP16.41■□□□□ 0.22
VIM-206ENST00000487938 UNQ9370/PRO34162Q6UXP9 181 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 OR8H1Q8NGG4 311 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 CLIP3Q96DZ5 547 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 POMT2Q9UKY4 750 aa16.41■□□□□ 0.22
VIM-206ENST00000487938 TP53BP1Q12888 1972 aaPredicted RBP16.41■□□□□ 0.22
VIM-206ENST00000487938 ANKRD61A6NGH8 418 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 PRAMEF2O60811 474 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 GPR3P46089 330 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 MRPS21P82921 87 aaKnown RBP16.4■□□□□ 0.22
VIM-206ENST00000487938 GSG1Q2KHT4 349 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 LINGO2Q7L985 606 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 ZDHHC1Q8WTX9 485 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 GIMAP1Q8WWP7 306 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 ADAMTS14Q8WXS8 1223 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 CLDN16Q9Y5I7 305 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 SLCO1B1Q9Y6L6 691 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.4■□□□□ 0.22
VIM-206ENST00000487938 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.4■□□□□ 0.22
VIM-206ENST00000487938 OR5K4A6NMS3 321 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 EFCAB7A8K855 629 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 PPM1BO75688 479 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 DRD1P21728 446 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 GDNFP39905 211 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 CCR4P51679 360 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 HTR4Q13639 388 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 KLF9Q13886 244 aaPredicted RBP16.4■□□□□ 0.22
VIM-206ENST00000487938 UBE2NLQ5JXB2 153 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 STPG1Q5TH74 334 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 FCRLAQ7L513 359 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 LRFN5Q96NI6 719 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 OR2M2Q96R28 347 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 ALG12Q9BV10 488 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 NMNAT2Q9BZQ4 307 aa16.4■□□□□ 0.22
VIM-206ENST00000487938 IGKV1D-42A0A075B6H8 117 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ZNF879B4DU55 563 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 PRAMEF26H0Y7S4 382 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 OIP5O43482 229 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ZFPL1O95159 310 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 THEGLP0DJG4 465 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 FZD2Q14332 565 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 PRTGQ2VWP7 1150 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 CD276Q5ZPR3 534 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ZNF767PQ75MW2 155 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 MOGAT1Q96PD6 335 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 TSPAN10Q9H1Z9 355 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 EMC7Q9NPA0 242 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 FLVCR2Q9UPI3 526 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ELOA3DA6NLF2 546 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 ARPC3O15145 178 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 GUSBP08236 651 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ANXA3P12429 323 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 PPM1FP49593 454 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 MAZP56270 477 aaKnown RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 RAB30Q15771 203 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 ELOA3BQ3SY89 546 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 LINC01590Q5TEZ4 76 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 FAM199XQ6PEV8 388 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 ELOA3Q8NG57 546 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 RGP1Q92546 391 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 MMABQ96EY8 250 aaPredicted RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 MAP3K3Q99759 626 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 SRA1Q9HD15 236 aaKnown RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 CYP8B1Q9UNU6 501 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 MRPS33Q9Y291 106 aaKnown RBP16.39■□□□□ 0.21
VIM-206ENST00000487938 ZNF281Q9Y2X9 895 aa16.39■□□□□ 0.21
VIM-206ENST00000487938 EML5Q05BV3 1969 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 SPTY2D1-AS1A0A0U1RR47 76 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 IFITM5A6NNB3 132 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 CLDN4O14493 209 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 NDUFB5O43674 189 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 GMFGO60234 142 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 GMDSO60547 372 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 GLCEO94923 617 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 F13BP05160 661 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 PTHLHP12272 177 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 GRK6P43250 576 aa16.38■□□□□ 0.21
VIM-206ENST00000487938 PSMD4P55036 377 aaKnown RBP16.38■□□□□ 0.21
VIM-206ENST00000487938 CD226Q15762 336 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms