RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SLC25A18Q9H1K4 315 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 NKX2-4Q9H2Z4 354 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 POT1Q9NUX5 634 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 MAGEB4O15481 346 aaPredicted RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 FMO6PO60774 539 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SPDEFO95238 335 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 FGF19O95750 216 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 DBIP07108 87 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 POU2F2P09086 479 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 GKN3PP0CG01 181 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 ART1P52961 327 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 METAP1P53582 386 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 HCCSP53701 268 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 CBFBQ13951 182 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 MPPED2Q15777 294 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 PWWP2BQ6NUJ5 590 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 TMEM17Q86X19 198 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SLC35F2Q8IXU6 374 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SLC43A2Q8N370 569 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 KCT2Q8NC54 265 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 OR2AK2Q8NG84 335 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 ATOH1Q92858 354 aaPredicted RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 ORAI1Q96D31 301 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 ZMYND19Q96E35 227 aaPredicted RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 LRFN5Q96NI6 719 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 GFI1Q99684 422 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SLC6A17Q9H1V8 727 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SAV1Q9H4B6 383 aaPredicted RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 PLCL2Q9UPR0 1127 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 YBX2Q9Y2T7 364 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 ETV7Q9Y603 341 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 GOSR2O14653 212 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 LYPD3O95274 346 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 SIX6O95475 246 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 UBBP0CG47 229 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 UBCP0CG48 685 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 CDK2P24941 298 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 RPS27AP62979 156 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 UBA52P62987 128 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 DEFA5Q01523 94 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 MRPL2Q5T653 305 aaKnown RBP12.22□□□□□ -0.45
USP40-214ENST00000483519 OR7G2Q8NG99 324 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 OR2A1Q8NGT9 310 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 MIB2Q96AX9 1013 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 DMRTA2Q96SC8 542 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 MFFQ9GZY8 342 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 PRSS16Q9NQE7 514 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 C14orf105Q9NVL8 296 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 ANKRD10Q9NXR5 420 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 LUZP4Q9P127 313 aa12.22□□□□□ -0.45
USP40-214ENST00000483519 CENPVL1A0A0U1RR11 272 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 SYNDIG1LA6NDD5 238 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 PTP4A3O75365 173 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 VSIG10L2P0DP72 767 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 TAS2R20P59543 309 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 OC90Q02509 493 aaPredicted RBP12.21□□□□□ -0.45
USP40-214ENST00000483519 LGALS3BPQ08380 585 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 GGTLC2Q14390 218 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 SLC36A1Q7Z2H8 476 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 ZNF619Q8N2I2 560 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 LRRC25Q8N386 305 aaPredicted RBP12.21□□□□□ -0.45
USP40-214ENST00000483519 ARL14Q8N4G2 192 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 TNFAIP8L1Q8WVP5 186 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 FERD3LQ96RJ6 166 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 SDF2Q99470 211 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 MRPS30Q9NP92 439 aaKnown RBP12.21□□□□□ -0.45
USP40-214ENST00000483519 OR5V1Q9UGF6 321 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 GMEB2Q9UKD1 530 aa12.21□□□□□ -0.45
USP40-214ENST00000483519 ACOD1A6NK06 481 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 PIN1P1O15428 100 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 TGM5O43548 720 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 CDC123O75794 336 aaPredicted RBP12.21□□□□□ -0.46
USP40-214ENST00000483519 RLN2P04090 185 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 RLN1P04808 185 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 NID1P14543 1247 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 MPGP29372 298 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 CTNNB1P35222 781 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 CD96P40200 585 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 PBX2P40425 430 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 NAA10P41227 235 aaPredicted RBP12.21□□□□□ -0.46
USP40-214ENST00000483519 CBX5P45973 191 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 SEC13P55735 322 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 CLDN12P56749 244 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 DUSP5Q16690 384 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 PABPC1L2AQ5JQF8 200 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 PDSS1Q5T2R2 415 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 C11orf88Q6PI97 169 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 TSSK4Q6SA08 328 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 ST8SIA2Q92186 375 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 COX14Q96I36 57 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 NKX6-2Q9C056 277 aaPredicted RBP12.21□□□□□ -0.46
USP40-214ENST00000483519 SLITRK2Q9H156 845 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 C6orf106Q9H6K1 298 aaPredicted RBP12.21□□□□□ -0.46
USP40-214ENST00000483519 ZNF304Q9HCX3 659 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 TAS2R8Q9NYW2 309 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 ZNF281Q9Y2X9 895 aa12.21□□□□□ -0.46
USP40-214ENST00000483519 SIGLEC6O43699 453 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 CBX7O95931 251 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 EGFP01133 1207 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 MYOGP15173 224 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms