RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZNF620Q6ZNG0 422 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SLC29A4Q7RTT9 530 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SLC51BQ86UW2 128 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 C17orf47Q8NEP4 570 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 OR2T4Q8NH00 348 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 GPR148Q8TDV2 347 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 RAB11FIP5Q9BXF6 653 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 DLL4Q9NR61 685 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 CARNS1A5YM72 827 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 DHCR24Q15392 516 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 OR7A5Q15622 319 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 DCST2Q5T1A1 773 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 ZNF529Q6P280 563 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 RASD2Q96D21 266 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 IL21RQ9HBE5 538 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 TRIP12Q14669 1992 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 B3GALNT1O75752 331 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 SLC2A5P22732 501 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 TUBG1P23258 451 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 FPR3P25089 353 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 PRDX1Q06830 199 aaKnown RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 CBFBQ13951 182 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 RAB33AQ14088 237 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ERV3-1Q14264 604 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 TSC22D1Q15714 1073 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 TMEM35AQ53FP2 167 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 PAN3Q58A45 887 aaKnown RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 UBE2NLQ5JXB2 153 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 C12orf73Q69YU5 71 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 KIAA0907Q7Z7F0 614 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 ZNF687Q8N1G0 1237 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 TSACCQ96A04 125 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 SLC38A3Q99624 504 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 NKX6-2Q9C056 277 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 ING1Q9UK53 422 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 POMT2Q9UKY4 750 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 GPR55Q9Y2T6 319 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 ZNF281Q9Y2X9 895 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 EDDM13A0A1B0GTR0 161 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 LRIT2A6NDA9 550 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 VEGFDO43915 354 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 NME2P22392 152 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 MRPL19P49406 292 aaKnown RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 FXNQ16595 210 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 C1orf94Q6P1W5 598 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 PRR22Q8IZ63 422 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 NANPQ8TBE9 248 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 GPATCH2Q9NW75 528 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 NPFFR2Q9Y5X5 522 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 TTLL8A6PVC2 850 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 DLL1O00548 723 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 IFNA21P01568 189 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 GLAP06280 429 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ADRB1P08588 477 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 SLC6A1P30531 599 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ELAVL3Q14576 367 aaKnown RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 PEA15Q15121 130 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ABCA11PQ4W5N1 156 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 SLC6A19Q695T7 634 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 OR10K2Q6IF99 312 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ADAM5Q6NVV9 412 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 DEFB123Q8N688 67 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 HERVK_113Q902F9 699 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 PEX11GQ96HA9 241 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 ELF4Q99607 663 aaPredicted RBP12.5□□□□□ -0.41
USP42-206ENST00000479544 GPA33Q99795 319 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 UQCC2Q9BRT2 126 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 CWH43Q9H720 699 aa12.5□□□□□ -0.41
USP42-206ENST00000479544 KCNE1BA0A087WTH5 132 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 ATP5A1P25705 553 aaKnown RBP12.49□□□□□ -0.41
USP42-206ENST00000479544 RBMXP38159 391 aaKnown RBP12.49□□□□□ -0.41
USP42-206ENST00000479544 RPE65Q16518 533 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 Q6ZTK2 550 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 TMED6Q8WW62 240 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 PHB2Q99623 299 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 MEMO1Q9Y316 297 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 LSM5Q9Y4Y9 91 aaKnown RBP12.49□□□□□ -0.41
USP42-206ENST00000479544 THSD7BQ9C0I4 1608 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 TRBV5-4A0A0C4DH59 114 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 A0A1W2PR48 441 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 PDZK1IP1Q13113 114 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 TRMT12Q53H54 448 aaKnown RBP12.49□□□□□ -0.41
USP42-206ENST00000479544 CNKSR3Q6P9H4 555 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 DPPA4Q7L190 304 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 OR52E1Q8NGJ3 308 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 OR1J4Q8NGS1 313 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 TBC1D20Q96BZ9 403 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 Q96M85 177 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 PFDN5Q99471 154 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 SLC5A10A0PJK1 596 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 SGK494L7N484 410 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 CPMP14384 443 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 NUP54Q7Z3B4 507 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 LRRTM1Q86UE6 522 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 DUSP18Q8NEJ0 188 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 SLC22A18Q96BI1 424 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 PELOQ9BRX2 385 aaKnown RBP12.49□□□□□ -0.41
USP42-206ENST00000479544 DNTTIP1Q9H147 329 aa12.49□□□□□ -0.41
USP42-206ENST00000479544 FBRSQ9HAH7 460 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms