RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CXCR2P25025 360 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CD1BP29016 333 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 SHMT2P34897 504 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TAGLN2P37802 199 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 KIR2DS4P43632 304 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CAV2P51636 162 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CRYBB1P53674 252 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 RAP1BP61224 184 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CDK16Q00536 496 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TLE4Q04727 773 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 LRRC63Q05C16 580 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF763Q0D2J5 394 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 ASPHQ12797 758 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 ZMYND11Q15326 602 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 SHHQ15465 462 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 KLHL38Q2WGJ6 581 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 SAMD4BQ5PRF9 694 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TIGD3Q6B0B8 471 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 OR52E8Q6IFG1 317 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 UQCC3Q6UW78 93 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HSDL2Q6YN16 418 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 PGAP1Q75T13 922 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 PRSS41Q7RTY9 318 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 ECHDC2Q86YB7 292 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 RDH10Q8IZV5 341 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 NKAPP1Q8N9T2 125 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 OR1L4Q8NGR5 311 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 FAM110BQ8TC76 370 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 DNAJA4Q8WW22 397 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 DCUN1D4Q92564 292 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 UFD1Q92890 307 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 RPUSD4Q96CM3 377 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CXorf40BQ96DE9 158 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CMTM7Q96FZ5 175 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HIST1H4GQ99525 98 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TSG101Q99816 390 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 MRPL45Q9BRJ2 306 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 NARFLQ9H6Q4 476 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 NHEJ1Q9H9Q4 299 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HYPKQ9NX55 129 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 COX16Q9P0S2 106 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 RAB26Q9ULW5 256 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TRAF3IP3Q9Y228 551 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 RPL36Q9Y3U8 105 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 SYNJ2BP-COX16A0A087WUM0 186 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 A0A1B0GVL5 298 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 PSMB11A5LHX3 300 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 A8MUA0 341 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 OXSR1O95747 527 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TSPAN12O95859 305 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 GSSP48637 474 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 GPM6AP51674 278 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 KPNA2P52292 529 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SEC61GP60059 68 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TIMM10P62072 90 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SELENOTP62341 195 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 PLD1Q13393 1074 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 MICBQ29980 383 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF630Q2M218 657 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 PARP15Q460N3 678 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 FILIP1LQ4L180 1135 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TFDP3Q5H9I0 405 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 C1orf100Q5SVJ3 147 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 OR2A2Q6IF42 318 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TMIGD1Q6UXZ0 262 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 RFLNAQ6ZTI6 216 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF571Q7Z3V5 609 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SLC26A11Q86WA9 606 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TRPV1Q8NER1 839 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 OR51S1Q8NGJ8 323 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 OR13C2Q8NGS9 318 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF721Q8TF20 911 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SHC3Q92529 594 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 TMEM101Q96IK0 257 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SLC39A3Q9BRY0 314 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 GCOM2Q9BZD3 368 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 C20orf85Q9H1P6 137 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 RNF167Q9H6Y7 350 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SGK2Q9HBY8 427 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 BFARQ9NZS9 450 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 SEC14L3Q9UDX4 400 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 ASF1AQ9Y294 204 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 PIGLQ9Y2B2 252 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 CDH10Q9Y6N8 788 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 PLEKHG1Q9ULL1 1385 aa1.94□□□□□ -2.1
CCDC88A-212ENST00000474059 MEGF6O75095 1541 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 IGLV3-16A0A075B6K0 115 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NSG1A0A0A6YYJ2 146 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 A0A0G2JLM5 398 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 OR52A4PA6NMU1 304 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 LOC110117498-PIK3R3F6TDL0 507 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 FOXH1O75593 365 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 CLDN9O95484 217 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 P04436 131 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 KLK3P07288 261 aaPredicted RBP1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 HTR1EP28566 365 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 IL12AP29459 219 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 OPRD1P41143 372 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NUP107P57740 925 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 PRPS1P60891 318 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms