RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CHRFAM7AQ494W8 412 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 C6orf52Q5T4I8 152 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 PODNL1Q6PEZ8 512 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 CLIP4Q8N3C7 705 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 ELOA3Q8NG57 546 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 ALKBH3Q96Q83 286 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-210ENST00000472880 TNFRSF13CQ96RJ3 184 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 MANSC1Q9H8J5 431 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 OBP2BQ9NPH6 170 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM45AQ9NWC5 275 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 MOKQ9UQ07 419 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 RASD1Q9Y272 281 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 IFT52Q9Y366 437 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 OR6C65A6NJZ3 312 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 KLF11O14901 512 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 UBDO15205 165 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 GTF2E2P29084 291 aaKnown RBP17.26■□□□□ 0.35
COL9A3-210ENST00000472880 SELENOPP49908 381 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 P2RY4P51582 365 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 EFNA4P52798 201 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 UBE2NP61088 152 aaKnown RBP17.26■□□□□ 0.35
COL9A3-210ENST00000472880 ZNF311Q5JNZ3 666 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 CREB3L2Q70SY1 520 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 SERPINA11Q86U17 422 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 MIER2Q8N344 545 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 OR9I1Q8NGQ6 314 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 OR1K1Q8NGR3 316 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 VPS33AQ96AX1 596 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 C3orf49Q96BT1 292 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 FBXO17Q96EF6 278 aa17.26■□□□□ 0.35
COL9A3-210ENST00000472880 ARGLU1Q9NWB6 273 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-210ENST00000472880 TMEM229AB2RXF0 380 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 LGI1O95970 557 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 H2AFXP16104 143 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-210ENST00000472880 VLDLRP98155 873 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 TBRG1Q3YBR2 411 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 NIPAL3Q6P499 406 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 MAVSQ7Z434 540 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 STK35Q8TDR2 534 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 C10orf105Q8TEF2 133 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 BOD1Q96IK1 185 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 OR52B2Q96RD2 323 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 REPIN1Q9BWE0 567 aaKnown RBP17.25■□□□□ 0.35
COL9A3-210ENST00000472880 RAD21L1Q9H4I0 556 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 FKBP7Q9Y680 259 aa17.25■□□□□ 0.35
COL9A3-210ENST00000472880 IGHV1-18A0A0C4DH31 117 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 NPIPB7O75200 414 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 PAX7P23759 505 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 SNRPD2P62316 118 aaKnown RBP17.24■□□□□ 0.35
COL9A3-210ENST00000472880 LGALS3BPQ08380 585 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 HDXQ7Z353 690 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 MFSD8Q8NHS3 518 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 BBS10Q8TAM1 723 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 SLC25A36Q96CQ1 311 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 ATP6V1G3Q96LB4 118 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 SLC38A2Q96QD8 506 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 RPS6KB2Q9UBS0 482 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 CHST2Q9Y4C5 530 aa17.24■□□□□ 0.35
COL9A3-210ENST00000472880 RNF212BA8MTL3 300 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 C5orf58C9J3I9 102 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 LY6HO94772 140 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 CRYAAP02489 173 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 NUDT7P0C024 238 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 PNMTP11086 282 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 RPS5P46782 204 aaKnown RBP17.23■□□□□ 0.35
COL9A3-210ENST00000472880 STX1BP61266 288 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 FADDQ13158 208 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 RGNQ15493 299 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 TTMPQ5BVD1 217 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 EPHX4Q8IUS5 362 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 PROX1Q92786 737 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 SLC35B4Q969S0 331 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 ZNF317Q96PQ6 595 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-210ENST00000472880 KATNB1Q9BVA0 655 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 BCL2L10Q9HD36 194 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 A4GALTQ9NPC4 353 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 CDC42EP3Q9UKI2 254 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 PCDHB14Q9Y5E9 798 aa17.23■□□□□ 0.35
COL9A3-210ENST00000472880 HEATR1Q9H583 2144 aaKnown RBP17.23■□□□□ 0.35
COL9A3-210ENST00000472880 FBN1P35555 2871 aaKnown RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 ARPC4-TTLL3A0A0A6YYG9 625 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 FTCDNL1E5RQL4 147 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 CLIC1O00299 241 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 UPK3AO75631 287 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 F12P00748 615 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 USF1P22415 310 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 SH3BGRP55822 239 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 HOXC5Q00444 222 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 SWI5Q1ZZU3 235 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 SLC2A7Q6PXP3 512 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 LINGO2Q7L985 606 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 GOLGA6L1Q8N7Z2 621 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 NANOS1Q8WY41 292 aaKnown RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 GTF2H4Q92759 462 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 MAL2Q969L2 176 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 KCNK17Q96T54 332 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 PTDSS2Q9BVG9 487 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 LINC00470Q9BZP3 86 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 PAIP1Q9H074 479 aaKnown RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 VIPAS39Q9H9C1 493 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms