RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ELOA3BQ3SY89 546 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 REEP3Q6NUK4 255 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 COMTD1Q86VU5 262 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 KRT73Q86Y46 540 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 WDR31Q8NA23 367 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 C1orf162Q8NEQ5 155 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 ELOA3Q8NG57 546 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC35B4Q969S0 331 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 MAGEB18Q96M61 343 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 TRAF4Q9BUZ4 470 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 SPATA5L1Q9BVQ7 753 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 RSPO3Q9BXY4 272 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 AMBRA1Q9C0C7 1298 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC17A5Q9NRA2 495 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 FAIMQ9NVQ4 179 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 ARGLU1Q9NWB6 273 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 MGAT4BQ9UQ53 548 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 KRT33AO76009 404 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC6A2P23975 617 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 PTAFRP25105 342 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 HTR2AP28223 471 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 MPGP29372 298 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 AQP1P29972 269 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 SELENOPP49908 381 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 NCALDP61601 193 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 EGR4Q05215 589 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 LGALS3BPQ08380 585 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 GLIPR1L2Q4G1C9 344 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 NIPAL3Q6P499 406 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 DHRS4L2Q6PKH6 230 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 KLHL24Q6TFL4 600 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 CXXC5Q7LFL8 322 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 KDM8Q8N371 416 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 C17orf78Q8N4C9 275 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 POMGNT2Q8NAT1 580 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 MFSD8Q8NHS3 518 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 RNF217Q8TC41 542 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 KTI12Q96EK9 354 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 RADILQ96JH8 1075 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 ALKBH3Q96Q83 286 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 CPPED1Q9BRF8 314 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 PTDSS2Q9BVG9 487 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 PRR14Q9BWN1 585 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 NPHS2Q9NP85 383 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 LEF1Q9UJU2 399 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 CORO2BQ9UQ03 480 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 RASD1Q9Y272 281 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 AMDHD2Q9Y303 409 aa13.78□□□□□ -0.2
CCDC88B-205ENST00000472524 A0A1B0GWA3 101 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 FTCDNL1E5RQL4 147 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 E7EQL1 145 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 RNF223E7ERA6 249 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 TPST1O60507 370 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 NDUFS7O75251 213 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 CRLF1O75462 422 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 VAMP5O95183 116 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 CD8AP01732 235 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 PNMTP11086 282 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 ACVR1BP36896 505 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 RGS8P57771 180 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 IRX1P78414 480 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 HIKESHIQ53FT3 197 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 AGAP6Q5VW22 663 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 DLEU7Q6UYE1 221 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 B3GLCTQ6Y288 498 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 CREB3L2Q70SY1 520 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 ABHD12BQ7Z5M8 362 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 DHDDSQ86SQ9 333 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 DTX2Q86UW9 622 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 DEPDC4Q8N2C3 294 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 HS6ST2Q96MM7 605 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF607Q96SK3 696 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 RABEP2Q9H5N1 569 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 PIF1Q9H611 641 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 TMEM38AQ9H6F2 299 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 VIPAS39Q9H9C1 493 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 TMEM45AQ9NWC5 275 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 SEC14L4Q9UDX3 406 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 GDF2Q9UK05 429 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 SLC13A4Q9UKG4 626 aa13.77□□□□□ -0.21
CCDC88B-205ENST00000472524 SONP18583 2426 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF587BE7ETH6 402 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 LGI1O95970 557 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 IGHV4-39P01824 125 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 H2AFXP16104 143 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 GPX2P18283 190 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 CBLP22681 906 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 IL1RL1Q01638 556 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 ETFDHQ16134 617 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 ALG10BQ5I7T1 473 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 C6orf89Q6UWU4 347 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 EPHX4Q8IUS5 362 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 FBXL14Q8N1E6 418 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 LSMEM1Q8N8F7 131 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 HIPK4Q8NE63 616 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 SLC38A4Q969I6 547 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 DHRS9Q9BPW9 319 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 CACNG6Q9BXT2 260 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 C12orf10Q9HB07 376 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 SELENONQ9NZV5 590 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms