RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 RPS4XP62701 263 aaKnown RBP18.66■□□□□ 0.58
HMGB3-205ENST00000455596 TGFBR3Q03167 851 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 DMTNQ08495 405 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 FAM91A1Q658Y4 838 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 KLHL17Q6TDP4 642 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 CREB3L2Q70SY1 520 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 ABHD12BQ7Z5M8 362 aaPredicted RBP18.66■□□□□ 0.58
HMGB3-205ENST00000455596 RANBP3LQ86VV4 465 aaPredicted RBP18.66■□□□□ 0.58
HMGB3-205ENST00000455596 C17orf78Q8N4C9 275 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 SLC47A1Q96FL8 570 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 PRR14Q9BWN1 585 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 AMBRA1Q9C0C7 1298 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 TMEM27Q9HBJ8 222 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 FGFR1OP2Q9NVK5 253 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 A0A1W2PR80 420 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 ABCD4O14678 606 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 MPGP29372 298 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 FAM69AQ5T7M9 428 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 TMEM108Q6UXF1 575 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 NET1Q7Z628 596 aaPredicted RBP18.65■□□□□ 0.58
HMGB3-205ENST00000455596 SLC30A8Q8IWU4 369 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 SMYD1Q8NB12 490 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 RNF217Q8TC41 542 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 SMAP2Q8WU79 429 aaPredicted RBP18.65■□□□□ 0.58
HMGB3-205ENST00000455596 Q96MF0 132 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 KAT8Q9H7Z6 458 aaKnown RBP18.65■□□□□ 0.58
HMGB3-205ENST00000455596 ZNF701Q9NV72 531 aaPredicted RBP18.65■□□□□ 0.58
HMGB3-205ENST00000455596 MGAT4BQ9UQ53 548 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 CADP27708 2225 aa18.65■□□□□ 0.58
HMGB3-205ENST00000455596 SHISA9B4DS77 424 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 KRT33AO76009 404 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 PTAFRP25105 342 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 ZNF83P51522 516 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 OR1Q1Q15612 314 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 NIPAL3Q6P499 406 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 EPHX4Q8IUS5 362 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 RADILQ96JH8 1075 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 GSX1Q9H4S2 264 aaPredicted RBP18.64■□□□□ 0.57
HMGB3-205ENST00000455596 CISD1Q9NZ45 108 aaKnown RBP18.64■□□□□ 0.57
HMGB3-205ENST00000455596 AMDHD2Q9Y303 409 aa18.64■□□□□ 0.57
HMGB3-205ENST00000455596 TRAV36DV7A0A075B6V5 113 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 A0A087WUJ7 227 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 A0A0B4J2E0 115 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 A0A1B0GX12 115 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 OR6C65A6NJZ3 312 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 M0QX08 132 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 FBP2O00757 339 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 AIM2O14862 343 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 FZD7O75084 574 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 OPN1SWP03999 348 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 VIMP08670 466 aaKnown RBP18.63■□□□□ 0.57
HMGB3-205ENST00000455596 INHBBP09529 407 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 DANCRP0C864 163 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 ZNF43P17038 809 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 SELENOPP49908 381 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 CYLC2Q14093 348 aaPredicted RBP18.63■□□□□ 0.57
HMGB3-205ENST00000455596 TRMT5Q32P41 509 aaKnown RBP18.63■□□□□ 0.57
HMGB3-205ENST00000455596 MMEL1Q495T6 779 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 HSP90B2PQ58FF3 399 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 C1QTNF12Q5T7M4 302 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 BIVMQ86UB2 503 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 PIAS4Q8N2W9 510 aaPredicted RBP18.63■□□□□ 0.57
HMGB3-205ENST00000455596 KDM8Q8N371 416 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 WDR31Q8NA23 367 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 OR10A6Q8NH74 314 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 TAAR8Q969N4 342 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 OXGR1Q96P68 337 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 WFDC6Q9BQY6 131 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 BDH2Q9BUT1 245 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 SLC17A5Q9NRA2 495 aa18.63■□□□□ 0.57
HMGB3-205ENST00000455596 ZNF469Q96JG9 3925 aaPredicted RBP18.63■□□□□ 0.57
HMGB3-205ENST00000455596 IGKV1D-42A0A075B6H8 117 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 M0R1B8 84 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 TPST2O60704 377 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 LGI1O95970 557 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 C8BP07358 591 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 SOD3P08294 240 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 PCGF2P35227 344 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 CDH11P55287 796 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 ATP5J2P56134 94 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 SF3A3Q12874 501 aaKnown RBP eCLIP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 MAPRE2Q15555 327 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 DUSP7Q16829 419 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 INTS11Q5TA45 600 aaKnown RBP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 CGB2Q6NT52 195 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 PATL1Q86TB9 770 aaKnown RBP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 TRMT61AQ96FX7 289 aaKnown RBP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 EPYCQ99645 322 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 MCHR1Q99705 422 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 ARHGDIGQ99819 225 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 SH3GL1Q99961 368 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 FAIMQ9NVQ4 179 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 KLHL14Q9P2G3 628 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 SEC14L4Q9UDX3 406 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 B3GALT5Q9Y2C3 310 aa18.62■□□□□ 0.57
HMGB3-205ENST00000455596 MAGED1Q9Y5V3 778 aaPredicted RBP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 FLNAP21333 2647 aaKnown RBP18.62■□□□□ 0.57
HMGB3-205ENST00000455596 BBIP1A8MTZ0 92 aa18.61■□□□□ 0.57
HMGB3-205ENST00000455596 ZNF587BE7ETH6 402 aa18.61■□□□□ 0.57
HMGB3-205ENST00000455596 M0R082 166 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms