RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 TLX2O43763 284 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 KRT86O43790 486 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 GMFGO60234 142 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 FGF17O60258 216 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 CEACAM4O75871 244 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 DCTN3O75935 186 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TNFAIP8O95379 198 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 AGTP01019 485 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 F7P08709 466 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 LIPCP11150 499 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 UQCRBP14927 111 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ETS2P15036 469 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 C4BPBP20851 252 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 GPX3P22352 226 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 CYP2F1P24903 491 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 PSMA2P25787 234 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 GIFP27352 417 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 PTPN4P29074 926 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RRM2P31350 389 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 FCGR2BP31994 310 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TALDO1P37837 337 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 FHITP49789 147 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 NDST1P52848 882 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 LIMK2P53671 638 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RAB14P61106 215 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 IFITM2Q01629 132 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 EIF3IQ13347 325 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 MED21Q13503 144 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SELPLGQ14242 412 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 KRT81Q14533 505 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 POU6F1Q14863 301 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 OXA1LQ15070 435 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 C3AR1Q16581 482 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 HAGHQ16775 308 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 IZUMO4Q1ZYL8 232 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 POM121L1PQ3SYA9 428 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RFTN2Q52LD8 501 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SPANXN4Q5MJ08 99 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RGS9BPQ6ZS82 235 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 Q6ZVQ6 151 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 DND1Q8IYX4 353 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 GCNT2Q8N0V5 402 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 CCNYL1Q8N7R7 359 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF557Q8N988 423 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF565Q8N9K5 539 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SPATA4Q8NEY3 305 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 OR2T11Q8NH01 316 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 OR2T3Q8NH03 318 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 CDC26Q8NHZ8 85 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 WDR36Q8NI36 951 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF564Q8TBZ8 553 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SSC4DQ8WTU2 575 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TRUB1Q8WWH5 349 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SMPDL3AQ92484 453 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF486Q96H40 463 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 DNAJC1Q96KC8 554 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TSNARE1Q96NA8 513 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 NEDD4LQ96PU5 975 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RAB40CQ96S21 281 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 KRT12Q99456 494 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TMEM109Q9BVC6 243 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 Q9H521 79 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ASB7Q9H672 318 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 LRRC19Q9H756 370 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 RMND5AQ9H871 391 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 KCNK13Q9HB14 408 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SLC52A3Q9NQ40 469 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZFP57Q9NU63 452 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 MED17Q9NVC6 651 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 PARVAQ9NVD7 372 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF624Q9P2J8 865 aaPredicted RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SNX12Q9UMY4 172 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 FOXJ3Q9UPW0 622 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 STK38LQ9Y2H1 464 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 HYOU1Q9Y4L1 999 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 MAD1L1Q9Y6D9 718 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 CITO14578 2027 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TEP1Q99973 2627 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF840PA6NDX5 716 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SMIM1B2RUZ4 78 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FAM25AB3EWG3 89 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FAM25CB3EWG5 89 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FAM25GB3EWG6 89 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TMX2-CTNND1H3BSU7 103 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PIRO00625 290 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RAD51BO15315 384 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 LANCL1O43813 399 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PCDH7O60245 1069 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 KIAA0513O60268 411 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TSPAN2O60636 221 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CDH16O75309 829 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NIPSNAP2O75323 286 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FKBP6O75344 327 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CDK14O94921 469 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PSMG1O95456 288 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ANGPTL1O95841 491 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NPPAP01160 153 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 IFNA16P05015 189 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FCER2P06734 321 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CD48P09326 243 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms