RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 C6orf10Q5SRN2 563 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 C1orf140Q5VVS0 124 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 ANKS4BQ8N8V4 417 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 OR1K1Q8NGR3 316 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 SLC25A36Q96CQ1 311 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 TMEM19Q96HH6 336 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 SLC38A2Q96QD8 506 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 SF3B5Q9BWJ5 86 aaKnown RBP12.67□□□□□ -0.38
SDC1-204ENST00000429035 SLC6A13Q9NSD5 602 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 TMEM45AQ9NWC5 275 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 GPR45Q9Y5Y3 372 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 A8MVM7 634 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 HDAC3O15379 428 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 PRG2P13727 222 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 APEHP13798 732 aaKnown RBP12.66□□□□□ -0.38
SDC1-204ENST00000429035 LSM11P83369 360 aaKnown RBP eCLIP12.66□□□□□ -0.38
SDC1-204ENST00000429035 MAPK11Q15759 364 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 IQCCQ4KMZ1 466 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 AP1ARQ63HQ0 302 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 SERPINA11Q86U17 422 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 ZIC4Q8N9L1 334 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 GLB1L3Q8NCI6 653 aaPredicted RBP12.66□□□□□ -0.38
SDC1-204ENST00000429035 PROX1Q92786 737 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 ADAM19Q9H013 955 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 RMND5AQ9H871 391 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 LPAR3Q9UBY5 353 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 KCNS2Q9ULS6 477 aa12.66□□□□□ -0.38
SDC1-204ENST00000429035 DSPPQ9NZW4 1301 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 NR5A2O00482 541 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 LMX1BO60663 402 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 UPK3AO75631 287 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 SLC22A3O75751 556 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 CRYAAP02489 173 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 IL6P05231 212 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 IDO1P14902 403 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 ACAA2P42765 397 aaKnown RBP12.65□□□□□ -0.38
SDC1-204ENST00000429035 GZMKP49863 264 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 CLDN17P56750 224 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 HOXC5Q00444 222 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 ROR2Q01974 943 aaKnown RBP12.65□□□□□ -0.38
SDC1-204ENST00000429035 PDCD4Q53EL6 469 aaKnown RBP12.65□□□□□ -0.38
SDC1-204ENST00000429035 RNF220Q5VTB9 566 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 KDM8Q8N371 416 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 CLIP4Q8N3C7 705 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 ARIH2OSQ8N7S6 290 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 PARD6BQ9BYG5 372 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 ARMC7Q9H6L4 198 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 TPT1P8Q9HAU6 139 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 OBP2BQ9NPH6 170 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 CA10Q9NS85 328 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 RPS6KB2Q9UBS0 482 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 ZNF232Q9UNY5 417 aa12.65□□□□□ -0.38
SDC1-204ENST00000429035 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.64□□□□□ -0.391e-7■■□□□ 12.7
SDC1-204ENST00000429035 TMEM120BA0PK00 339 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 F12P00748 615 aaPredicted RBP12.64□□□□□ -0.39
SDC1-204ENST00000429035 CECR9P0C854 216 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 PNMTP11086 282 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 IGFBP5P24593 272 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 RPS5P46782 204 aaKnown RBP12.64□□□□□ -0.39
SDC1-204ENST00000429035 CAPZA2P47755 286 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 NPRL3Q12980 569 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 SLC9B1Q4ZJI4 515 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 ZNF311Q5JNZ3 666 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 FAM166AQ6J272 317 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 CREB3L2Q70SY1 520 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 LINGO2Q7L985 606 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 OR9I1Q8NGQ6 314 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 RNF217Q8TC41 542 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 SLC38A5Q8WUX1 472 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 ITCHQ96J02 903 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 KATNB1Q9BVA0 655 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 SPATA9Q9BWV2 254 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 SEC61A2Q9H9S3 476 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 THAP1Q9NVV9 213 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 RASD1Q9Y272 281 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 STAB1Q9NY15 2570 aa12.64□□□□□ -0.39
SDC1-204ENST00000429035 A0A096LPI6 279 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 LOC100289279A0A1B0GTE1 492 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 TMEM229AB2RXF0 380 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 C5orf58C9J3I9 102 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 SEC14L2O76054 403 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 VAMP5O95183 116 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 TFPTP0C1Z6 253 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 OR4A8P0C604 315 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 ZNF43P17038 809 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 SRD5A1P18405 259 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 CBLP22681 906 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 SERPINF1P36955 418 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 NR4A2P43354 598 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 IDH3GP51553 393 aaPredicted RBP12.63□□□□□ -0.39
SDC1-204ENST00000429035 P2RY4P51582 365 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 MVDP53602 400 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 WDR4P57081 412 aaKnown RBP12.63□□□□□ -0.39
SDC1-204ENST00000429035 SRSF2Q01130 221 aaKnown RBP12.63□□□□□ -0.39
SDC1-204ENST00000429035 NAAAQ02083 359 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 C1DQ13901 141 aaKnown RBP12.63□□□□□ -0.39
SDC1-204ENST00000429035 SWI5Q1ZZU3 235 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 MST1LQ2TV78 715 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 GPR137CQ8N3F9 429 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 STK35Q8TDR2 534 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms