RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 CDC6Q99741 560 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 DUSP15Q9H1R2 295 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 TMEM218A2RU14 115 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 SOX3P41225 446 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 AGTR2P50052 363 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CDK6Q00534 326 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZNF674Q2M3X9 581 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 C14orf28Q4W4Y0 310 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 VHLLQ6RSH7 139 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 RFLNAQ6ZTI6 216 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PEG10Q86TG7 708 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 KLBQ86Z14 1044 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PLA2G15Q8NCC3 412 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 OR1S1Q8NH92 325 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 HGDQ93099 445 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 OR4K3Q96R72 315 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZNF607Q96SK3 696 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 RGCCQ9H4X1 137 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 FGF22Q9HCT0 170 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 RARRES3Q9UL19 164 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 VWA8A3KMH1 1905 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 AGAP14A8MT82 685 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GFYI3L273 518 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SRPX2O60687 465 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 SH3BGRLO75368 114 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 CDC34P49427 236 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 CSNK1EP49674 416 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 EPHA4P54764 986 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SURF2Q15527 256 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 ZNF630Q2M218 657 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 B3GLCTQ6Y288 498 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 RIMKLAQ8IXN7 391 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OR1J4Q8NGS1 313 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 PLAGL1Q9UM63 463 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 DUXAA6NLW8 204 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 H7BY64 318 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 DPM1O60762 260 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OPN1LWP04000 364 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 F7P08709 466 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 OR8G3PP0DMU2 310 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 TYRP1P17643 537 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 CXCL3P19876 107 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 CNR1P21554 472 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 TIA1P31483 386 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP54-205ENST00000424265 RPS10P46783 165 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 RPS13P62277 151 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 PRDX1Q06830 199 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 CAMK2DQ13557 499 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GUCA2BQ16661 112 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 NAXEQ8NCW5 288 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 RHBDD1Q8TEB9 315 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 PHYHIPQ92561 330 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 COX14Q96I36 57 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 PRAP1Q96NZ9 151 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GSTO2Q9H4Y5 243 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 FAM212BQ9NTI7 297 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 SPIN1Q9Y657 262 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 NUP205Q92621 2012 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 A0A0U1RQS6 177 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 LNP1A1A4G5 178 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 CREBL2O60519 120 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 RECKO95980 971 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 MT-ND4LP03901 98 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SNRNP70P08621 437 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 CPN1P15169 458 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GRK6P43250 576 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OR5M10Q6IEU7 315 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OR10K2Q6IF99 312 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 FRMPD2BQ6IN97 320 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 TMEM107Q6UX40 140 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 LRRC28Q86X40 367 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 DTWD1Q8N5C7 304 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ZCCHC10Q8TBK6 192 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ZNF480Q8WV37 535 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 TNFAIP8L1Q8WVP5 186 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SLC25A46Q96AG3 418 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SLC41A3Q96GZ6 507 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ELF4Q99607 663 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 C1QTNF3Q9BXJ4 246 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 PNO1Q9NRX1 252 aaKnown RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 COPS7AQ9UBW8 275 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ADAM29Q9UKF5 820 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 A0A1W2PQF6 199 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OTOL1A6NHN0 477 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 DLEU1O43261 78 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 FZD7O75084 574 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ERCC1P07992 297 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 NR2F6P10588 404 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 EPORP19235 508 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 DRD5P21918 477 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GPX3P22352 226 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 SMIM11AP58511 58 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ILKQ13418 452 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 HABP2Q14520 560 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 SLC5A12Q1EHB4 618 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 PDZD11Q5EBL8 140 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ZNF542PQ5EBM4 170 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 YOD1Q5VVQ6 348 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 GTPBP8Q8N3Z3 284 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 CSNK1A1LQ8N752 337 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms