RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SHARPINQ9H0F6 387 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 TRAV20A0A0B4J274 112 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 AGFG1P52594 562 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 TCTE1Q5JU00 501 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 WDR74Q6RFH5 385 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 NDUFAF7Q7L592 441 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 C1orf127Q8N9H9 656 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 TMEM239Q8WW34 195 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 TSLPQ969D9 159 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MUCL1Q96DR8 90 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC35E1Q96K37 410 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 STACQ99469 402 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ETV7Q9Y603 341 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 PCGF2P35227 344 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 PSMB10P40306 273 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SPCS2Q15005 226 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 DUSP28Q4G0W2 176 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 CHADLQ6NUI6 762 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SCAMP5Q8TAC9 235 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 KIAA1456Q9P272 454 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 BRWD1Q9NSI6 2320 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ATXN1LP0C7T5 689 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ACP2P11117 423 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MOB3CQ70IA8 216 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 CLDN19Q8N6F1 224 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SLAMF7Q9NQ25 335 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ADGRB1O14514 1584 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 DIP2AQ14689 1571 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MYOCOSA0A1B0GUC4 107 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 H3BVH4 76 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SPINT2O43291 252 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 B3GNT9Q6UX72 402 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MDGA2Q7Z553 956 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MFSD9Q8NBP5 474 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ABHD6Q9BV23 337 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 RNF150Q9ULK6 438 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MYBPHLA2RUH7 354 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 TREML2Q5T2D2 321 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF626Q68DY1 528 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 NCBP2-AS2Q69YL0 99 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 C22orf39Q6P5X5 142 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 HUS1BQ8NHY5 278 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 DEFB118Q96PH6 123 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 AK3Q9UIJ7 227 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 RTL8BQ17RB0 113 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MANEALQ5VSG8 457 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 THNSL2Q86YJ6 484 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 KCTD12Q96CX2 325 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 TIMM29Q9BSF4 260 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 SMOC2Q9H3U7 446 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 CDK5R2Q13319 367 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MBTPS1Q14703 1052 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 IL17AQ16552 155 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 DGAT2L6Q6ZPD8 337 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF573Q86YE8 665 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 RIMS4Q9H426 269 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 CRLF2Q9HC73 371 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 KCNG2Q9UJ96 466 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 RCE1Q9Y256 329 aa12.48□□□□□ -0.41
CCDC88A-204ENST00000413716 MTCP1P56278 107 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR7A5Q15622 319 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 TMUB2Q71RG4 321 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 VWDEQ8N2E2 1590 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNFX1Q9P2E3 1918 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 MPGP29372 298 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 HMGCLP35914 325 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR2B8PP59922 312 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FKBP1AP62942 108 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF91Q05481 1191 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 LCN8Q6JVE9 175 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FA2HQ7L5A8 372 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 TIPARPQ7Z3E1 657 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 LRRC18Q8N456 261 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 GGHQ92820 318 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF724A8MTY0 619 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 GATCO43716 136 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 RAB1AP62820 205 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 RBPJQ06330 500 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FFAR4Q5NUL3 377 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 PPP1R3BQ86XI6 285 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 CLEC1AQ8NC01 280 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR10J5Q8NHC4 309 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 KIRREL1Q96J84 757 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ANKRD60Q9BZ19 345 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 TTYH3Q9C0H2 523 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 LYPLA2O95372 231 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR10A3P58181 314 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 RPS27LQ71UM5 84 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR4K5Q8NGD3 323 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR1J2Q8NGS2 313 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FBXO34Q9NWN3 711 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 DCTN6O00399 190 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ITGAMP11215 1152 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 P2RX3P56373 397 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 PDE7AQ13946 482 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ADAM5Q6NVV9 412 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 DEFB119Q8N690 84 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 LMNTD1Q8N9Z9 388 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 IL25Q9H293 177 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms