RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 TRIM3O75382 744 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 GP1BBP13224 206 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 CXCR1P25024 350 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 UQCRC1P31930 480 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 P2RX1P51575 399 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 PSMD7P51665 324 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 NR0B1P51843 470 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 BLVRAP53004 296 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ZNF85Q03923 595 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 MXD1Q05195 221 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 COL9A2Q14055 689 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ALG10Q5BKT4 473 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 VWA2Q5GFL6 755 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 SLC6A19Q695T7 634 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DMKNQ6E0U4 476 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 FAAH2Q6GMR7 532 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 RPL22L1Q6P5R6 122 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 JAZF1Q86VZ6 243 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 METTL21AQ8WXB1 218 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TMEM234Q8WY98 164 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 OMA1Q96E52 524 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DIRAS2Q96HU8 199 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TTYH2Q9BSA4 534 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 HDHD5Q9BXW7 423 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ISG20L2Q9H9L3 353 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ABCB9Q9NP78 766 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 NPAP1Q9NZP6 1156 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 RARRES3Q9UL19 164 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DCHS1Q96JQ0 3298 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 CEP250Q9BV73 2442 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TRAV36DV7A0A075B6V5 113 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TRAV1-2A0A0B4J238 106 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 C4orf47A7E2U8 309 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 PATE3B3GLJ2 98 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 SLC25A12O75746 678 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ARL6IP5O75915 188 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 SYPP08247 313 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TACSTD2P09758 323 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 PTNP21246 168 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ABCD3P28288 659 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 CD79BP40259 229 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TGM4P49221 684 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DUSP3P51452 185 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 CCR4P51679 360 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 POLR2HP52434 150 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DCDP81605 110 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 DNASE1L3Q13609 305 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 VASNQ6EMK4 673 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 FAM131AQ6UXB0 335 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 TMEM91Q6ZNR0 172 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 LAX1Q8IWV1 398 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 SLC35F2Q8IXU6 374 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 OR8H2Q8N162 312 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 ZNF321PQ8N8H1 164 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 LRRC75AQ8NAA5 344 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 OR5L2Q8NGL0 311 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 OR4K13Q8NH42 304 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 STT3BQ8TCJ2 826 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 STK35Q8TDR2 534 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 C4orf36Q96KX1 117 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 UBL7Q96S82 380 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 NEURL2Q9BR09 285 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 NUDT22Q9BRQ3 303 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 RXFP3Q9NSD7 469 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 C19orf25Q9UFG5 118 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 YARS2Q9Y2Z4 477 aaKnown RBP12.37□□□□□ -0.43
LIMS1-205ENST00000410093 NPFFR2Q9Y5X5 522 aa12.37□□□□□ -0.43
LIMS1-205ENST00000410093 J3QLW9 94 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 PHYHO14832 338 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 HCRTR2O43614 444 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 OR2T1O43869 369 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 SC5DO75845 299 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 DLGAP3O95886 979 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 HEXBP07686 556 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 ZNF19P17023 458 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 SPI1P17947 270 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 TACR3P29371 465 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 DLX5P56178 289 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 RNF4P78317 190 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 ZNF117Q03924 483 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 TRA2AQ13595 282 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMS1-205ENST00000410093 MFSD13AQ14CX5 517 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 NDUFAF6Q330K2 333 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 NKAIN1Q4KMZ8 207 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 HBMQ6B0K9 141 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 SLC23A3Q6PIS1 610 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 APOOLQ6UXV4 268 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 COX15Q7KZN9 410 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 OVCH1Q7RTY7 1134 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 MAMDC2Q7Z304 686 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-205ENST00000410093 FAM122BQ7Z309 247 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 GRINAQ7Z429 371 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 NANOGNBQ7Z5D8 188 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 PXKQ7Z7A4 578 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 C10orf53Q8N6V4 93 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 ZFP41Q8N8Y5 198 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 CYB561A3Q8NBI2 242 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 SDR9C7Q8NEX9 313 aa12.36□□□□□ -0.43
LIMS1-205ENST00000410093 OR2T4Q8NH00 348 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms