RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 LSRQ86X29 649 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 NAXEQ8NCW5 288 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 STK35Q8TDR2 534 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 RND1Q92730 232 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 ABTB1Q969K4 478 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 SLC41A3Q96GZ6 507 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 WDYHV1Q96HA8 205 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 SFXN2Q96NB2 322 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 SEPHS2Q99611 448 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 TIMP4Q99727 224 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 PIP5K1AQ99755 562 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 TTYH2Q9BSA4 534 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 PTDSS2Q9BVG9 487 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 SSBP4Q9BWG4 385 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 POTEKPQ9BYX7 375 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 NMNAT1Q9HAN9 279 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 SLC7A7Q9UM01 511 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 RPH3AQ9Y2J0 694 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 TMED7Q9Y3B3 224 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 HDGFL3Q9Y3E1 203 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 DSCAMO60469 2012 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TMEM72A0PK05 275 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 ERICH4A6NGS2 130 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 GJE1A6NN92 205 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 A8MVM7 634 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 H3BNX3 289 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 hCG_2039718K7EN88 272 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 DNPH1O43598 174 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 FKBP6O75344 327 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 KRT36O76013 467 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TSPAN19P0C672 248 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SHC1P29353 583 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 NOS3P29474 1203 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 GCKP35557 465 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TAS2R41P59536 307 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 H3F3AP84243 136 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TFF3Q07654 80 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TRAM2Q15035 370 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 ZNF239Q16600 458 aaKnown RBP8.22□□□□□ -1.09
VPS53-203ENST00000401468 SYT14P1Q58G82 188 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 C1orf185Q5T7R7 199 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 ZFP1Q6P2D0 407 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 ESPNLQ6ZVH7 1005 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SEM1Q6ZVN7 128 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TMEM200AQ86VY9 491 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 CYP4Z1Q86W10 505 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 C10orf67Q8IYJ2 551 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 PM20D2Q8IYS1 436 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 RNF113BQ8IZP6 322 aaKnown RBP8.22□□□□□ -1.09
VPS53-203ENST00000401468 LILRA2Q8N149 483 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 CADM2Q8N3J6 435 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 OR4C15Q8NGM1 316 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 OR5M1Q8NGP8 315 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SLC7A13Q8TCU3 470 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 ZPLD1Q8TCW7 415 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 LIPHQ8WWY8 451 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SARAFQ96BY9 339 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 HS6ST2Q96MM7 605 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 PSD2Q9BQI7 771 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 CHID1Q9BWS9 393 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 LIME1Q9H400 295 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 YY1AP1Q9H869 796 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 COQ10BQ9H8M1 238 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SERINC1Q9NRX5 453 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 STOML1Q9UBI4 398 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 RPS6KB2Q9UBS0 482 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 CAMK2AQ9UQM7 478 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 TRAPPC4Q9Y296 219 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 SPIN1Q9Y657 262 aaPredicted RBP8.22□□□□□ -1.09
VPS53-203ENST00000401468 V9GYQ6 96 aa8.22□□□□□ -1.09
VPS53-203ENST00000401468 NIPBLQ6KC79 2804 aaeCLIP8.21□□□□□ -1.09
VPS53-203ENST00000401468 ACANP16112 2415 aa8.21□□□□□ -1.09
VPS53-203ENST00000401468 ANKHD1Q8IWZ3 2542 aaKnown RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 A0A0J9YW62 118 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ZC3H12DA2A288 527 aaKnown RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 ARRDC5A6NEK1 342 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 AHRRA9YTQ3 701 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 FTCDNL1E5RQL4 147 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ENTPD5O75356 428 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 DEAF1O75398 565 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 PMS2P2O95744 297 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 H1F0P07305 194 aaKnown RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 HOXD4P09016 255 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 CXCR1P25024 350 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 CHRNB4P30926 498 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 PTGER4P35408 488 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 STARP49675 285 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 SUCLG1P53597 346 aaKnown RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 CTBP2P56545 445 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 CLDN20P56880 219 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 SMIM11AP58511 58 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 SRYQ05066 204 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 MYBPHQ13203 477 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ATP6AP1Q15904 470 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 OR2T5Q6IEZ7 315 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ZNF770Q6IQ21 691 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 B3GNT6Q6ZMB0 384 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 NKAIN4Q8IVV8 208 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 OR2T29Q8NH02 315 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 LILRB4Q8NHJ6 448 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms