RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SPDEFO95238 335 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 RASAL1O95294 804 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 LGI1O95970 557 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 CT45A10P0DMU9 189 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 RAB6AP20340 208 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 NDUFA6P56556 154 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 OR1Q1Q15612 314 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 KCTD11Q693B1 232 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 PM20D1Q6GTS8 502 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 FAM199XQ6PEV8 388 aaPredicted RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 MEX3DQ86XN8 651 aaKnown RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 SLC7A13Q8TCU3 470 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 C17orf50Q8WW18 174 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 HAS2Q92819 552 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 ZBTB8AQ96BR9 441 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 DDX31Q9H8H2 851 aaKnown RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 SLC39A9Q9NUM3 307 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 NDRG4Q9ULP0 352 aaKnown RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 NRG2O14511 850 aaPredicted RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 DVL1O14640 695 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 SGCEO43556 437 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 PRICKLE3O43900 615 aaPredicted RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 TNFSF15O95150 251 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 RPA2P15927 270 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 SDHBP21912 280 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 OMGP23515 440 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 TM4SF4P48230 202 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 DVL1P1P54792 670 aaPredicted RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 NPY5RQ15761 445 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 CCBE1Q6UXH8 406 aaPredicted RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 SLC35D2Q76EJ3 337 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 BTLAQ7Z6A9 289 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 ZFP90Q8TF47 636 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 ELMOD3Q96FG2 381 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 SLC46A1Q96NT5 459 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 OR7D2Q96RA2 312 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 SGPP1Q9BX95 441 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 PPIL3Q9H2H8 161 aaKnown RBP6.69□□□□□ -1.34
UPF2-203ENST00000397053 PIGLQ9Y2B2 252 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 MMACHCQ9Y4U1 282 aa6.69□□□□□ -1.34
UPF2-203ENST00000397053 A0A1B0GX78 115 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FAM183AA6NL82 134 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TMEM189-UBE2V1I3L0A0 370 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF749O43361 778 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FZD7O75084 574 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 MED6O75586 246 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 C7P10643 843 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FOSL1P15407 271 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 VEZF1Q14119 521 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PIP5KL1Q5T9C9 394 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FRMPD2BQ6IN97 320 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 LPCAT3Q6P1A2 487 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 LETMD1Q6P1Q0 360 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 GFRALQ6UXV0 394 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TAS1R1Q7RTX1 841 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SUMF2Q8NBJ7 301 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SYNPRQ8TBG9 265 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 CMTM3Q96MX0 182 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 INPP5KQ9BT40 448 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 RIMS4Q9H426 269 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 NIPAL2Q9H841 368 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PRSS16Q9NQE7 514 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 KCNIP2Q9NS61 270 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SAGE1Q9NXZ1 904 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 NID2Q14112 1375 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TMED7-TICAM2A0A0A6YYA0 188 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 NOTOA8MTQ0 251 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 RAB27BO00194 218 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FGF4P08620 206 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 IL7P13232 177 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SDC1P18827 310 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 BLVRBP30043 206 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR1D5P58170 312 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FGFBP1Q14512 234 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 MRPL2Q5T653 305 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 ESPNLQ6ZVH7 1005 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TP53INP2Q8IXH6 220 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PIANPQ8IYJ0 282 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SCML4Q8N228 414 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 EXD3Q8N9H8 876 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF784Q8NCA9 323 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR56B4Q8NH76 319 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF582Q96NG8 517 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 CNTNAP3BQ96NU0 1288 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 KATNB1Q9BVA0 655 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SAP130Q9H0E3 1048 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ARV1Q9H2C2 271 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PRDM9Q9NQV7 894 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TMED7Q9Y3B3 224 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SLC5A10A0PJK1 596 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ARPC1BO15143 372 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 SCO1O75880 301 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 C1orf105O95561 183 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TFP02787 698 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 MGST1P10620 155 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 PIPP12273 146 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 PRLHRP49683 370 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 BAXQ07812 192 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SHHQ15465 462 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 KCNJ8Q15842 424 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms