RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NTHL1P78549 312 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 PARS2Q7L3T8 475 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OR8J2Q8NGG1 315 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 PHOSPHO2Q8TCD6 241 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 MYADML2A6NDP7 307 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OPN1LWP04000 364 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OR8U8P0C7N1 319 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 METTL15P1P0C7V9 234 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 LBX1P52954 281 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 FOXA1P55317 472 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 C15orf54Q8N8G6 183 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF845Q96IR2 970 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OPA3Q9H6K4 179 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 RPS10-NUDT3A0A1W2PQS6 291 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 IMPA2O14732 288 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 YKT6O15498 198 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 MGST1P10620 155 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 PRKACAP17612 351 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 RPS10P46783 165 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 DCDP81605 110 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OGFOD3Q6PK18 319 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 CBLL1Q75N03 491 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 LRRC56Q8IYG6 542 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 C1GALT1Q9NS00 363 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OR7C1O76099 320 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 AADACP22760 399 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OR5M10Q6IEU7 315 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 FCRLAQ7L513 359 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 AAED1Q7RTV5 226 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 CMTM2Q8TAZ6 248 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 PIGQQ9BRB3 760 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 FN3KRPQ9HA64 309 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC39A9Q9NUM3 307 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 MEIS3P2A8K0S8 358 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF587BE7ETH6 402 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 HSPB6O14558 160 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 PTGESO14684 152 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 FABP1P07148 127 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 HOXD11P31277 338 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 LGALS4P56470 323 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 YPEL5P62699 121 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM74A1Q5RGS3 127 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 OR1S2Q8NGQ3 325 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 SERPINF1P36955 418 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 CLDN10P78369 228 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 C9orf135Q5VTT2 229 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 ADIPOR2Q86V24 386 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 EID2Q8N6I1 236 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 GNB4Q9HAV0 340 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 ACTL7AQ9Y615 435 aa11.91□□□□□ -0.5
CCDC88C-204ENST00000389857 F3P13726 295 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 ANXA7P20073 488 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 AOAHP28039 575 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 FAPQ12884 760 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 COL9A2Q14055 689 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TMEM176BQ3YBM2 270 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 FJX1Q86VR8 437 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 ADGRG5Q8IZF4 528 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 AGBL5Q8NDL9 886 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 OR1E3Q8WZA6 343 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TWSG1Q9GZX9 223 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 NXT1Q9UKK6 140 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 SSUH2Q9Y2M2 353 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 PCDHGA5Q9Y5G8 931 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 GPR45Q9Y5Y3 372 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 C4orf47A7E2U8 309 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 GSTP1P09211 210 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 CYBAP13498 195 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 ENPP1P22413 925 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TSPAN31Q12999 210 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 FRMD1Q8N878 549 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 WDR76Q9H967 626 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 VAPAQ9P0L0 249 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 CDC14CA4D256 554 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 CLDN1O95832 211 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 HTR2CP28335 458 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 EIF2DP41214 584 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 DMWDQ09019 674 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 PARP16Q8N5Y8 322 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TTC9BQ8N6N2 239 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 OR4F15Q8NGB8 312 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 STT3BQ8TCJ2 826 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 HCFC1R1Q9NWW0 138 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TEX51A0A1B0GUA7 166 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 PRICKLE3O43900 615 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 FADS1O60427 444 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 IMPA1P29218 277 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF133P52736 654 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 KCNJ10P78508 379 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 GAREM2Q75VX8 874 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 EPHX3Q9H6B9 360 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 NIPAL2Q9H841 368 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 BCAT2O15382 392 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 HLA-HP01893 362 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 OR2T7P0C7T2 308 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 CARD18P57730 90 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 JAG1P78504 1218 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 C17orf67Q0P5P2 114 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TBC1D28Q2M2D7 210 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 CATSPERDQ86XM0 798 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms