RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MXD1Q05195 221 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 SNAPC1Q16533 368 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 ESCO2Q56NI9 601 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 AKAP1Q92667 903 aaKnown RBP eCLIP11.73□□□□□ -0.53
CLK3-201ENST00000345005 KCTD12Q96CX2 325 aaKnown RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 TRMT61AQ96FX7 289 aaKnown RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 LRR1Q96L50 414 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 LMF1Q96S06 567 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 KCNJ15Q99712 375 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 ARHGAP9Q9BRR9 750 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 RANBP3Q9H6Z4 567 aaPredicted RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 MED17Q9NVC6 651 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 CNIH4Q9P003 139 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 RPS6KB2Q9UBS0 482 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 TMEM5Q9Y2B1 443 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 LINC00854A0A1B0GVQ3 168 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 A0A1B0GWA3 101 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 KLF4O43474 513 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 PRKNO60260 465 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 REM1O75628 298 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 KLK3P07288 261 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 PSKH1P11801 424 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 NAGAP17050 411 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 IL12BP29460 328 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 CCKBRP32239 447 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 RBM34P42696 430 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 MTNR1AP48039 350 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 NR0B1P51843 470 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 BDH1Q02338 343 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 SLC27A4Q6P1M0 643 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 ULK3Q6PHR2 472 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 CNIH2Q6PI25 160 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 KIF18BQ86Y91 864 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 ATP6V1C2Q8NEY4 427 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 RNFT2Q96EX2 444 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 LRFN5Q96NI6 719 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 UBL7Q96S82 380 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 SEMA4CQ9C0C4 833 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 FLRT3Q9NZU0 649 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 C19orf25Q9UFG5 118 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 GPN3Q9UHW5 284 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 ZNF223Q9UK11 482 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 NXT1Q9UKK6 140 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 MED31Q9Y3C7 131 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 ALG5Q9Y673 324 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 B4E171 279 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 NTN1O95631 604 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 TSPAN7P41732 249 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 GPR4P46093 362 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 CAPZA2P47755 286 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 NUBP1P53384 320 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 IL18Q14116 193 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 MRPL14Q6P1L8 145 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 WDR88Q6ZMY6 472 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 MEX3DQ86XN8 651 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 GHDCQ8N2G8 530 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 ZNF441Q8N8Z8 693 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 POGLUT1Q8NBL1 392 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 FAM71CQ8NEG0 241 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 NFAM1Q8NET5 270 aaPredicted RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 OR52N1Q8NH53 320 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 ADOQ96SZ5 270 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 CRB3Q9BUF7 120 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 JAM3Q9BX67 310 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 KCNN2Q9H2S1 579 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 WDR54Q9H977 334 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 PLSCR3Q9NRY6 295 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 PPIEQ9UNP9 301 aaKnown RBP11.72□□□□□ -0.53
CLK3-201ENST00000345005 BOLA1Q9Y3E2 137 aa11.72□□□□□ -0.53
CLK3-201ENST00000345005 MPDZO75970 2070 aa11.71□□□□□ -0.53
CLK3-201ENST00000345005 KDM4EB2RXH2 506 aaPredicted RBP11.71□□□□□ -0.54
CLK3-201ENST00000345005 INMT-MINDY4F8WBC2 141 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 GTPBP1O00178 669 aaKnown RBP11.71□□□□□ -0.54
CLK3-201ENST00000345005 WWP2O00308 870 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 PIP5K1CO60331 668 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 TSPAN2O60636 221 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 DHFRP00374 187 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 NGFRP08138 427 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 ZNF806P0C7X5 589 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 PEPDP12955 493 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 CCL4P13236 92 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 IFI30P13284 250 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 CD53P19397 219 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 TALDO1P37837 337 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 PLA2G5P39877 138 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 PNLIPRP2P54317 469 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 RNF4P78317 190 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 PLCXD2Q0VAA5 305 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 TRAM1Q15629 374 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 ALG10BQ5I7T1 473 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 FNDC7Q5VTL7 733 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 LCN10Q6JVE6 187 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 ACSM5Q6NUN0 579 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 FAM122CQ6P4D5 195 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 TMEM205Q6UW68 189 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 TMPRSS11FQ6ZWK6 438 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 CPEB2Q7Z5Q1 589 aaKnown RBP11.71□□□□□ -0.54
CLK3-201ENST00000345005 CADM2Q8N3J6 435 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 KLHL36Q8N4N3 616 aa11.71□□□□□ -0.54
CLK3-201ENST00000345005 IQCF1Q8N6M8 205 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms