RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMEM17Q86X19 198 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 LNX2Q8N448 690 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SDR9C7Q8NEX9 313 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 C2orf15Q8WU43 125 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SFT2D1Q8WV19 159 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TIFAQ96CG3 184 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF471Q9BX82 626 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 BIN3Q9NQY0 253 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 GSN-AS1Q9NRJ2 163 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 CMC2Q9NRP2 79 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TM7SF3Q9NS93 570 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 KLHL28Q9NXS3 571 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF346Q9UL40 294 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 FAM86C2PA6NEL3 165 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 FAM171A2A8MVW0 826 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 PRICKLE3O43900 615 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 LILRB5O75023 590 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 ELFN1P0C7U0 828 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 LIPCP11150 499 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 BDKRB2P30411 391 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 NTSP30990 170 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TAS2R43P59537 309 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 BAIAP2L2Q6UXY1 529 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 MOB3CQ70IA8 216 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 OR4K13Q8NH42 304 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SNX33Q8WV41 574 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 CDS1Q92903 461 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TCEAL4Q96EI5 215 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 GAL3ST1Q99999 423 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 AIF1LQ9BQI0 150 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 AKAP7Q9P0M2 348 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC22A7Q9Y694 548 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SNRNP200O75643 2136 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 CCSO14618 274 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 CD53P19397 219 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 NPBWR1P48145 328 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 SNRPEP62304 92 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM71Q6P5X7 295 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZCCHC12Q6PEW1 402 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF836Q6ZNA1 936 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TLNRD1Q9H1K6 362 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 DHCR7Q9UBM7 475 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 FBXO4Q9UKT5 387 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 LRFN2Q9ULH4 789 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF337Q9Y3M9 751 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM218A2RU14 115 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 SYT5O00445 386 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 OR2T1O43869 369 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TBX19O60806 448 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ACRP10323 421 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC2A5P22732 501 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ITGB8P26012 769 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 NUDT18Q6ZVK8 323 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 HTR3DQ70Z44 454 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 OVCH1Q7RTY7 1134 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TMED4Q7Z7H5 227 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 C12orf45Q8N5I9 185 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF461Q8TAF7 563 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 THAP6Q8TBB0 222 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 C10orf90Q96M02 699 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 TNFRSF13CQ96RJ3 184 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 NEDD8-MDP1E9PL57 170 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 OGG1O15527 345 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 RFC3P40938 356 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF136P52737 540 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 NANOS3P60323 173 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ODF4Q2M2E3 257 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 PAN3Q58A45 887 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 FAM46CQ5VWP2 391 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 UNQ6126/PRO20091Q6UXV3 157 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 OR52E2Q8NGJ4 325 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 OR4C6Q8NH72 309 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 RXFP4Q8TDU9 374 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 FAM83CQ9BQN1 747 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 RHBGQ9H310 441 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 FBXO34Q9NWN3 711 aa12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF223Q9UK11 482 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF443Q9Y2A4 671 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-201ENST00000331194 A0A0A6YYD5 115 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 A0A1B0GTH9 108 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 RIIAD1A6NNX1 92 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 GNB5O14775 395 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 RPP14O95059 124 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 RPA2P15927 270 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 HSD17B2P37059 387 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 Q3ZCU0 254 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 PRRT3Q5FWE3 981 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 LY6G6FQ5SQ64 297 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM215Q68D42 235 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 FAM111BQ6SJ93 734 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 FRRS1Q6ZNA5 592 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 GRHL3Q8TE85 626 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 GLYATL2Q8WU03 294 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM239Q8WW34 195 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 RGP1Q92546 391 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 PTDSS2Q9BVG9 487 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 XKR8Q9H6D3 395 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC25A13Q9UJS0 675 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 CCL26Q9Y258 94 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 NARSO43776 548 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms