RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FGF18O76093 207 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 DDAH2O95865 285 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 C6orf132Q5T0Z8 1188 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF684Q5T5D7 378 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 STEAP1BQ6NZ63 245 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 MOB3CQ70IA8 216 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 CD200R1Q8TD46 325 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 REEP6Q96HR9 211 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ACPTQ9BZG2 426 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SPHK1Q9NYA1 384 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 NEURL4Q96JN8 1562 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 TGOLN2O43493 480 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 TOX4O94842 621 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 RUNX2Q13950 521 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 VAMP3Q15836 100 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 HYAL4Q2M3T9 481 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 KLHDC8BQ8IXV7 354 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SIGLECL1Q8N7X8 197 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 OR13F1Q8NGS4 319 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 KCNG3Q8TAE7 436 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 PBX4Q9BYU1 374 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 A0A1W2PQU0 124 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 PEX10O60683 326 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ALX3O95076 343 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SNRPBP14678 240 aaKnown RBP12.94□□□□□ -0.34
CSPG4-201ENST00000308508 HTR6P50406 440 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SUMO1P63165 101 aaKnown RBP12.94□□□□□ -0.34
CSPG4-201ENST00000308508 OR5M8Q8NGP6 311 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 PIGCQ92535 297 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF778Q96MU6 729 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ROBO1Q9Y6N7 1651 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 TRAPPC2P0DI81 140 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 TRAPPC2BP0DI82 140 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 IL4RP24394 825 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 FER1L6Q2WGJ9 1857 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SIAH3Q8IW03 269 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 CELF2-AS1Q8N7Q2 184 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 RTP3Q9BQQ7 232 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF587BE7ETH6 402 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF239Q16600 458 aaKnown RBP12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF586Q9NXT0 402 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 NENFQ9UMX5 172 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 YY2O15391 372 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 MBP02144 154 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF728P0DKX0 622 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 C5AR1P21730 350 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 RABIFP47224 123 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 BTG1P62324 171 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 IL34Q6ZMJ4 242 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 PDCD1LG2Q9BQ51 273 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 MOB1AQ9H8S9 216 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SLAMF7Q9NQ25 335 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 KCMF1Q9P0J7 381 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 FAM208AQ9UK61 1670 aaKnown RBP12.94□□□□□ -0.34
CSPG4-201ENST00000308508 OR10J4P0C629 311 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 GRB2P62993 217 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ABHD17BQ5VST6 288 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ADAM5Q6NVV9 412 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 CTU1Q7Z7A3 348 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 NLGN4YQ8NFZ3 816 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 LMO3Q8TAP4 145 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SECTM1Q8WVN6 248 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 BORCS6Q96GS4 357 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FAM173AQ9BQD7 235 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 C11orf54Q9H0W9 315 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SMLR1H3BR10 107 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 CR2P20023 1033 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 H3F3AP84243 136 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 MEX3DQ86XN8 651 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ZMAT5Q9UDW3 170 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 MOKQ9UQ07 419 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 GABRR3A8MPY1 467 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FRS3O43559 492 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 OTX2P32243 289 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 MTCP1P56278 107 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 TSPAN31Q12999 210 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FCN2Q15485 313 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ADGRF3Q8IZF5 1079 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 TMEM217Q8N7C4 229 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 TSACCQ96A04 125 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SAT2Q96F10 170 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SLC41A2Q96JW4 573 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 TRAPPC2LQ9UL33 140 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 NAGAP17050 411 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FAM162BQ5T6X4 162 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 OR7E24Q6IFN5 339 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SLC35D1Q9NTN3 355 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 KDM4EB2RXH2 506 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 OR13C7P0DN81 318 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 CTRB1P17538 263 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FOXA1P55317 472 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 RPS25P62851 125 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 RNF212Q495C1 297 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 CTRB2Q6GPI1 263 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SFT2D1Q8WV19 159 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 VDAC3Q9Y277 283 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 HMGN2P05204 90 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 OR8U8P0C7N1 319 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF133P52736 654 aaPredicted RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SLC7A9P82251 487 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms