RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 WNT1P04628 370 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 HSD3B1P14060 373 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 GABRA1P14867 456 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 NME1P15531 152 aaKnown RBP10.06□□□□□ -0.8
LSM3-201ENST00000306024 BMP7P18075 431 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 HSD3B2P26439 372 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 TLX1P31314 330 aaPredicted RBP10.06□□□□□ -0.8
LSM3-201ENST00000306024 UBE2MP61081 183 aaKnown RBP10.06□□□□□ -0.8
LSM3-201ENST00000306024 SSTP61278 116 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 MC1RQ01726 317 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 PEA15Q15121 130 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 OLFML2AQ68BL7 652 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 NUDT13Q86X67 352 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 ARL14Q8N4G2 192 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 OR5D16Q8NGK9 328 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 MS4A3Q96HJ5 214 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 WDR77Q9BQA1 342 aaPredicted RBP10.06□□□□□ -0.8
LSM3-201ENST00000306024 EXO5Q9H790 373 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 AUNIPQ9H7T9 357 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 PELI2Q9HAT8 420 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 KLHL28Q9NXS3 571 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 NTMQ9P121 344 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 KLHL9Q9P2J3 617 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 ICKQ9UPZ9 632 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 ENTPD4Q9Y227 616 aa10.06□□□□□ -0.8
LSM3-201ENST00000306024 AK6Q9Y3D8 172 aaKnown RBP10.06□□□□□ -0.8
LSM3-201ENST00000306024 A0A0B4J203 849 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 RNF13O43567 381 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SUSD5O60279 629 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 NDUFS6O75380 124 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 EML2O95834 649 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 MT-ND5P03915 603 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SEMG1P04279 462 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 UBBP0CG47 229 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 UBCP0CG48 685 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 DRD2P14416 443 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CD79BP40259 229 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 LUMP51884 338 aaPredicted RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 RPS27AP62979 156 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 UBA52P62987 128 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 SEC23BQ15437 767 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 DEFB110Q30KQ9 67 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 KRBOX4Q5JUW0 171 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 NHLRC1Q6VVB1 395 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 PGAP1Q75T13 922 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 RBM45Q8IUH3 476 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 SLC22A18ASQ8N1D0 253 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CAMKVQ8NCB2 501 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 GCDHQ92947 438 aaPredicted RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 CNTNAP3BQ96NU0 1288 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ELF4Q99607 663 aaPredicted RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 ADAT1Q9BUB4 502 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 SLC38A1Q9H2H9 487 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CNIH4Q9P003 139 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ENTPD2Q9Y5L3 495 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CUL9Q8IWT3 2517 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 C19orf67A6NJJ6 358 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ACHEP22303 614 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 TIA1P31483 386 aaKnown RBP eCLIP10.05□□□□□ -0.8
LSM3-201ENST00000306024 PYCR1P32322 319 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ZNF763Q0D2J5 394 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 DOC2BQ14184 412 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SSX2Q16385 188 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 C9orf152Q5JTZ5 239 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 RABEPKQ7Z6M1 372 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 NAA40Q86UY6 237 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 MCATQ8IVS2 390 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 GTPBP8Q8N3Z3 284 aaPredicted RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 OR2L3Q8NG85 312 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SLC7A13Q8TCU3 470 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 MRPS24Q96EL2 167 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 ZDHHC12Q96GR4 267 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ALG8Q9BVK2 526 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SGPP1Q9BX95 441 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CAPN10Q9HC96 672 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ZFP57Q9NU63 452 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ASB6Q9NWX5 421 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 PRUNE2Q8WUY3 3088 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 TMEM200CA6NKL6 621 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 FAM183AA6NL82 134 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 EIF3GO75821 320 aaKnown RBP eCLIP10.05□□□□□ -0.8
LSM3-201ENST00000306024 ARL6IP5O75915 188 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 IGLV3-19P01714 112 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 FAM157BP0CG42 384 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SMIM6P0DI80 62 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 IFNGR1P15260 489 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 S100A2P29034 98 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 RFC3P40938 356 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ART1P52961 327 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 PABPC1L2AQ5JQF8 200 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 TMEM69Q5SWH9 247 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SLC6A19Q695T7 634 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 HEPHL1Q6MZM0 1159 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 FAAP20Q6NZ36 180 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 ZC3H14Q6PJT7 736 aaKnown RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 INO80EQ8NBZ0 244 aaPredicted RBP10.05□□□□□ -0.8
LSM3-201ENST00000306024 REG4Q9BYZ8 158 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 CHST2Q9Y4C5 530 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SLCO1B1Q9Y6L6 691 aa10.05□□□□□ -0.8
LSM3-201ENST00000306024 SPTBP11277 2137 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms