RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 THAP6Q8TBB0 222 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 ZPLD1Q8TCW7 415 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 SMIM19Q96E16 107 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 NMNAT3Q96T66 252 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 SLC46A2Q9BY10 475 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 IL21Q9HBE4 155 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 MED17Q9NVC6 651 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 CHD7Q9P2D1 2997 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 LRIT2A6NDA9 550 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 WASH3PC4AMC7 463 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 FADS1O60427 444 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 SLC25A12O75746 678 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 OR2A4O95047 310 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 CD3DP04234 171 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 HIST1H1CP16403 213 aaKnown RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 CSNK2A2P19784 350 aaPredicted RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 NANOS3P60323 173 aaKnown RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 RBM39Q14498 530 aaKnown RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 PABPC1L2AQ5JQF8 200 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 MRPL2Q5T653 305 aaKnown RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 GLB1L2Q8IW92 636 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 BEST3Q8N1M1 668 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 SPICQ8N5J4 248 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 OR7G2Q8NG99 324 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 ZCCHC10Q8TBK6 192 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 HSPA12BQ96MM6 686 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 FOXN4Q96NZ1 517 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 MS4A4EQ96PG1 132 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 OR2A7Q96R45 310 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 TCF7L1Q9HCS4 588 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 IL36AQ9UHA7 158 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 PCDHB10Q9UN67 800 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 WNT6Q9Y6F9 365 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 TRAV18A0A075B6X5 111 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ANKRD20A5PA0PJZ0 165 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 CARNS1A5YM72 827 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 OR6C76A6NM76 312 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 OR5K4A6NMS3 321 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 OR52A4PA6NMU1 304 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 RBBP9O75884 186 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ZFPL1O95159 310 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ASGR2P07307 311 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 MEOX2P50222 304 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 BTN3A2P78410 334 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 NKPD1Q17RQ9 610 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 LINC01555Q8NAE3 123 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ZNF511Q8NB15 262 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 TRIM43Q96BQ3 446 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 GIMAP5Q96F15 307 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 PRSS27Q9BQR3 290 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 LGR4Q9BXB1 951 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 TREM1Q9NP99 234 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 CMC2Q9NRP2 79 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 AKAP7Q9P0M2 348 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 IER3IP1Q9Y5U9 82 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 V9GY05 133 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 TUBAL3A6NHL2 446 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 KLF4O43474 513 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 DNAJB6O75190 326 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 OR8G3PP0DMU2 310 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 MESP2Q0VG99 397 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 UBXN2BQ14CS0 331 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 DUSP5Q16690 384 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 AMZ1Q400G9 498 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 PWWP2BQ6NUJ5 590 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ADIPOR2Q86V24 386 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 LMF1Q96S06 567 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 POFUT1Q9H488 388 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 MEPEQ9NQ76 525 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 HCFC2Q9Y5Z7 792 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 TRBV23OR9-2A0A075B6M9 112 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 F5H0A9 414 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 AGPAT2O15120 278 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 PCCBP05166 539 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 DPP4P27487 766 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 BDKRB2P30411 391 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 BCL6P41182 706 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 SNRPEP62304 92 aaKnown RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 FBXO46Q6PJ61 603 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 TMPRSS9Q7Z410 1059 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 NPAS4Q8IUM7 802 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 OR51D1Q8NGF3 324 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 Q96M85 177 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 VRK1Q99986 396 aaPredicted RBP13.19□□□□□ -0.3
SDC1-201ENST00000254351 ZNF337Q9Y3M9 751 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 ZNF780BQ9Y6R6 833 aa13.19□□□□□ -0.3
SDC1-201ENST00000254351 SYT5O00445 386 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 EMC8O43402 210 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 GSTZ1O43708 216 aaPredicted RBP13.18□□□□□ -0.3
SDC1-201ENST00000254351 GMFGO60234 142 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 SYN1P17600 705 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 CNR1P21554 472 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 GALP22466 123 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 TAS2R43P59537 309 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 CSNK1G2P78368 415 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 SCRN3Q0VDG4 424 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 TRMT12Q53H54 448 aaKnown RBP13.18□□□□□ -0.3
SDC1-201ENST00000254351 LCTLQ6UWM7 567 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.18□□□□□ -0.35e-7■■□□□ 13.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms