RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FAHD2BQ6P2I3 314 aaPredicted RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 BLOC1S2Q6QNY1 142 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 AFTPHQ6ULP2 937 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 ANKRD37Q7Z713 158 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 OR51S1Q8NGJ8 323 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 OR52B4Q8NGK2 314 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 OR52K2Q8NGK3 314 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 OR56B4Q8NH76 319 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 ACER1Q8TDN7 264 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 FAHD2AQ96GK7 314 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 AKR1E2Q96JD6 320 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 SLC30A2Q9BRI3 323 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 SPATA16Q9BXB7 569 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 IFI27L2Q9H2X8 130 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 CDC42EP4Q9H3Q1 356 aaKnown RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 DHX33Q9H6R0 707 aaKnown RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 CALHM2Q9HA72 323 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 PLGRKTQ9HBL7 147 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 LAMP5Q9UJQ1 280 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 ANAPC7Q9UJX3 599 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 SNX6Q9UNH7 406 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 RNF6Q9Y252 685 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 CAB39Q9Y376 341 aaPredicted RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 MAD1L1Q9Y6D9 718 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 ITGB4P16144 1822 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 IGKV1D-8A0A087WSZ0 117 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 A0A087WZY1 265 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 A0A0G2JN53 185 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 IQANK1A0A1B0GTG1 560 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ERICH4A6NGS2 130 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 CLDN3O15551 220 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 MFN2O95140 757 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 PTBP3O95758 552 aaKnown RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 F10P00742 488 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 SFTPCP11686 197 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 MUC1P15941 1255 aaPredicted RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 CYP2F1P24903 491 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 PBLDP30039 288 aaPredicted RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 PTGFRP43088 359 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 CAMLGP49069 296 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 HNMTP50135 292 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 RIPPLY1Q0D2K3 151 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 CUL1Q13616 776 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 FILIP1LQ4L180 1135 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 BOLA3Q53S33 107 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ATAD3BQ5T9A4 648 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ANGPTL8Q6UXH0 198 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 GDPD3Q7L5L3 318 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 PRSS41Q7RTY9 318 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ERASQ7Z444 233 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 CBWD2Q8IUF1 395 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 MMAAQ8IVH4 418 aaKnown RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 CENPLQ8N0S6 344 aaPredicted RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 C15orf54Q8N8G6 183 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ARPC1AQ92747 370 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 MYLPFQ96A32 169 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 TUBGCP3Q96CW5 907 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 RMI2Q96E14 147 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 TESK2Q96S53 571 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 NPAS2Q99743 824 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 THUMPD2Q9BTF0 503 aaKnown RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 RHOJQ9H4E5 214 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 NCOR1P1Q9H4R4 102 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 ZNF430Q9H8G1 570 aaPredicted RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 ZDHHC4Q9NPG8 344 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 SMPD3Q9NY59 655 aaPredicted RBP1.85□□□□□ -2.11
CD44-239ENST00000639002 TMOD2Q9NZR1 351 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 DEC1Q9P2X7 70 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 FOXJ3Q9UPW0 622 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 OARD1Q9Y530 152 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 SPACA6W5XKT8 324 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 MROH7-TTC4A0A0A0MT08 1334 aa1.85□□□□□ -2.11
CD44-239ENST00000639002 PHF3Q92576 2039 aaKnown RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 PDS5BQ9NTI5 1447 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 GSAPA4D1B5 854 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 CTAGE15A4D2H0 777 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 FAM25EA8MYX2 175 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ANGPT2O15123 496 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 MAPK13O15264 365 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ANGPTL7O43827 346 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 KLHL41O60662 606 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 TPST2O60704 377 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 RHOBTB1O94844 696 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 OR4F21O95013 312 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 CTDNEP1O95476 244 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ADCY5O95622 1261 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 P04436 131 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 PNMA6AP0CW24 399 aaPredicted RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 HSPA5P11021 654 aaKnown RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 TDGF1P13385 188 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 FUT1P19526 365 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 CYP2B6P20813 491 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ANXA13P27216 316 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 PSMA5P28066 241 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 MAGEA5P43359 124 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 TDGF1P3P51864 188 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 GBX2P52951 348 aaPredicted RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 ACTR1AP61163 376 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 SELENOTP62341 195 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 RAB40BQ12829 278 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms