RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OR13C4Q8NGS5 318 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 CSGALNACT1Q8TDX6 532 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 NUDCD2Q8WVJ2 157 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 DYRK2Q92630 601 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 PPCDCQ96CD2 204 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM176AQ96HP8 235 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TSSK3Q96PN8 268 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 WRAP53Q9BUR4 548 aaKnown RBP5.34□□□□□ -1.56
SCN1A-216ENST00000637968 CNTNAP3Q9BZ76 1288 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 LAT2Q9GZY6 243 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 CWH43Q9H720 699 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TMPRSS4Q9NRS4 437 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 CA10Q9NS85 328 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 USP36Q9P275 1121 aaKnown RBP5.34□□□□□ -1.56
SCN1A-216ENST00000637968 PITPNC1Q9UKF7 332 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 MEMO1Q9Y316 297 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 URGCP-MRPS24S4R325 110 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 AKAP11Q9UKA4 1901 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 PEAK1Q9H792 1746 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C13orf42A0A1B0GVH6 325 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR5H14A6NHG9 310 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 A6NIZ1 184 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR6C76A6NM76 312 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ACOT7O00154 380 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ACKR2O00590 384 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF208O43345 1280 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LANCL1O43813 399 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GOSR1O95249 250 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OSMP13725 252 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ACKR3P25106 362 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 PRRX1P54821 245 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 IL10RBQ08334 325 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 RAB40BQ12829 278 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OLIG2Q13516 323 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF311Q5JNZ3 666 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ELFN2Q5R3F8 820 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C19orf48Q6RUI8 117 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LDB1Q86U70 411 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SYT12Q8IV01 421 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF100Q8IYN0 542 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF433Q8N7K0 673 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C19orf47Q8N9M1 422 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 B3GALNT2Q8NCR0 500 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 IMP4Q96G21 291 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SCLYQ96I15 445 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CAPNS2Q96L46 248 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR1F2PQ96R84 312 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GPR21Q99679 349 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CDC6Q99741 560 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SNHG12Q9BXW3 62 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TNFRSF12AQ9NP84 129 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LYRM2Q9NU23 88 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ASB6Q9NWX5 421 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LRRC37A3O60309 1634 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ELOA3DA6NLF2 546 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 NPIPB8E9PQR5 432 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A17O43808 307 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 HBP1O60381 514 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LRATO95237 230 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 WNT1P04628 370 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR5AC1P0C628 307 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ANKRD34CP0C6C1 535 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CHRNB4P30926 498 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 BMP8BP34820 402 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ARL2P36404 184 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CAMLGP49069 296 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 PTH2RP49190 550 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CAV2P51636 162 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 S100A10P60903 97 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ST8SIA6P61647 398 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SNRPGP62308 76 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LSM11P83369 360 aaKnown RBP eCLIP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SEZ6Q53EL9 994 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C4orf17Q53FE4 359 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM41BQ5BJD5 291 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MEX3BQ6ZN04 569 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 BMP8AQ7Z5Y6 402 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MRPL52Q86TS9 123 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF573Q86YE8 665 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ETFBKMTQ8IXQ9 262 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF738Q8NE65 137 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SDR9C7Q8NEX9 313 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 BBS10Q8TAM1 723 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF707Q96C28 371 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TXN2Q99757 166 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 POTEKPQ9BYX7 375 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ATG4BQ9Y4P1 393 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 UBIAD1Q9Y5Z9 338 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 BAZ2AQ9UIF9 1905 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1W2PPE2 198 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ASPDHA6ND91 283 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MASP2O00187 686 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 NME6O75414 186 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ENDOD1O94919 500 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SERPINA2P20848 420 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 HSD11B1P28845 292 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MPGP29372 298 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 S100GP29377 79 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SOAT1P35610 550 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms