RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IP6K3Q96PC2 410 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 GPX7Q96SL4 187 aaPredicted RBP15.26■□□□□ 0.03
CLN3-252ENST00000636907 HCAR1Q9BXC0 346 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 NAA50Q9GZZ1 169 aaKnown RBP15.26■□□□□ 0.03
CLN3-252ENST00000636907 NRIP3Q9NQ35 241 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 MRPS18AQ9NVS2 196 aaKnown RBP15.26■□□□□ 0.03
CLN3-252ENST00000636907 DLL3Q9NYJ7 618 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 DMXL1Q9Y485 3027 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 CUL9Q8IWT3 2517 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 G3V3Y1 287 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 TSPAN19P0C672 248 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ADORA3P0DMS8 318 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ZNF3P17036 446 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ACVR2AP27037 513 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 DCKP27707 260 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PSMB9P28065 219 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 HTR1FP30939 366 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ERVK-25P63136 954 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ITGADQ13349 1161 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 CRMP1Q14194 572 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ANKDD1AQ495B1 522 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ALG10Q5BKT4 473 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 FAM69AQ5T7M9 428 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 JMJD6Q6NYC1 403 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 IGF2-ASQ6U949 168 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PLCZ1Q86YW0 608 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 BEST3Q8N1M1 668 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 C9orf43Q8TAL5 461 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 ISOC1Q96CN7 298 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 SLC25A36Q96CQ1 311 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 C1GALT1C1Q96EU7 318 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 KATNB1Q9BVA0 655 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 H2AFY2Q9P0M6 372 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 WARS2Q9UGM6 360 aaKnown RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 RIF1Q5UIP0 2472 aaKnown RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 EML6Q6ZMW3 1958 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PRR23D1E9PI22 279 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 APOL3O95236 402 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 AHSA1O95433 338 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 MT-ATP6P00846 226 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 IFNGP01579 166 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 HIST1H2ABP04908 130 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PRR23D2P0DMB1 279 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 LIFP15018 202 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 HIST1H1CP16403 213 aaKnown RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 IL11P20809 199 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 TCEA1P23193 301 aaKnown RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 RPL18Q07020 188 aaKnown RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 DBPQ10586 325 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 RAB40BQ12829 278 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 KLHL22Q53GT1 634 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 NIPAL3Q6P499 406 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 C5orf46Q6UWT4 87 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 HIST3H2AQ7L7L0 130 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 MAMDC2Q7Z304 686 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 GID4Q8IVV7 300 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 CYB561A3Q8NBI2 242 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 OR52E2Q8NGJ4 325 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 OR4K13Q8NH42 304 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 FCGR1BQ92637 280 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 HIST1H2ACQ93077 130 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PTP4A1Q93096 173 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 KIAA1143Q96AT1 154 aaPredicted RBP15.25■□□□□ 0.03
CLN3-252ENST00000636907 YIPF3Q9GZM5 350 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 PTGES2Q9H7Z7 377 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 KLHL1Q9NR64 748 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 WDR70Q9NW82 654 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 SEC14L4Q9UDX3 406 aa15.25■□□□□ 0.03
CLN3-252ENST00000636907 ANKRD33BA6NCL7 494 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 FAM47E-STBD1D6RA91 191 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 SLC30A4O14863 429 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 SNPHO15079 494 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 ARPC3O15145 178 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 ZNF208O43345 1280 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 EFNA2O43921 213 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 RAB36O95755 333 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 CD14P08571 375 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 FOXK1P85037 733 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 FAM98AQ8NCA5 519 aaKnown RBP15.24■□□□□ 0.03
CLN3-252ENST00000636907 SLC37A3Q8NCC5 494 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 SDR9C7Q8NEX9 313 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 CRELD1Q96HD1 420 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 FGF20Q9NP95 211 aaPredicted RBP15.24■□□□□ 0.03
CLN3-252ENST00000636907 CLEC2DQ9UHP7 191 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 KLHL21Q9UJP4 597 aa15.24■□□□□ 0.03
CLN3-252ENST00000636907 DIMT1Q9UNQ2 313 aaKnown RBP15.24■□□□□ 0.03
CLN3-252ENST00000636907 IRGMA1A4Y4 181 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 FTCDNL1E5RQL4 147 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 M0R082 166 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 F13BP05160 661 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 LIPCP11150 499 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 ITGA3P26006 1051 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 GRPRP30550 384 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 CTXN1P60606 82 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLN3-252ENST00000636907 RNLSQ5VYX0 342 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 MEPCEQ7L2J0 689 aaKnown RBP15.23■□□□□ 0.03
CLN3-252ENST00000636907 SHFQ7M4L6 423 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 ZNF227Q86WZ6 799 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 ATP6V1C2Q8NEY4 427 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms