RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ADGRG4Q8IZF6 3080 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 A0A087WUJ7 227 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 SMAD9O15198 467 aaKnown RBP16.14■□□□□ 0.17
CLN3-239ENST00000628023 DNPH1O43598 174 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 EIF1BO60739 113 aaKnown RBP16.14■□□□□ 0.17
CLN3-239ENST00000628023 SMNDC1O75940 238 aaKnown RBP eCLIP16.14■□□□□ 0.17
CLN3-239ENST00000628023 PRKD3O94806 890 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 OR5F1O95221 314 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 IMPDH2P12268 514 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 RPS5P46782 204 aaKnown RBP16.14■□□□□ 0.17
CLN3-239ENST00000628023 FOXD4Q12950 439 aaPredicted RBP16.14■□□□□ 0.17
CLN3-239ENST00000628023 FXNQ16595 210 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 TMEM201Q5SNT2 666 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 P3H2Q8IVL5 708 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 BTBD10Q9BSF8 475 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 MUC13Q9H3R2 512 aa16.14■□□□□ 0.17
CLN3-239ENST00000628023 LIPT2A6NK58 231 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 SS18L1O75177 396 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 FPR1P21462 350 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 RASSF2P50749 326 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 RASGEF1BQ0VAM2 473 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 BNIP1Q12981 228 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 PIN1Q13526 163 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 TTC33Q6PID6 262 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 CYP2R1Q6VVX0 501 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 FAM214BQ7L5A3 538 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 TSPYL5Q86VY4 417 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 CYP4Z1Q86W10 505 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 C10orf53Q8N6V4 93 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 RELL2Q8NC24 303 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 PIGXQ8TBF5 258 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 SLC25A36Q96CQ1 311 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 KTI12Q96EK9 354 aaPredicted RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 LRRC46Q96FV0 321 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 CLPTM1LQ96KA5 538 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 PRRC1Q96M27 445 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 PIGMQ9H3S5 423 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 SLC24A3Q9HC58 644 aa16.13■□□□□ 0.17
CLN3-239ENST00000628023 INTS1Q8N201 2190 aaKnown RBP16.13■□□□□ 0.17
CLN3-239ENST00000628023 MPDZO75970 2070 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 F8P00451 2351 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 IGKV1D-42A0A075B6H8 117 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 TRAV36DV7A0A075B6V5 113 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 CYTIPO60759 359 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 NPIPB7O75200 414 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 TNFSF13O75888 250 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 ATP5HO75947 161 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 KLK2P20151 261 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 YAP1P46937 504 aaKnown RBP16.12■□□□□ 0.17
CLN3-239ENST00000628023 ASCL1P50553 236 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 EGR4Q05215 589 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 OTUD3Q5T2D3 398 aaPredicted RBP16.12■□□□□ 0.17
CLN3-239ENST00000628023 ABLIM2Q6H8Q1 611 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 VWA1Q6PCB0 445 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 LUZP2Q86TE4 346 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 DHFR2Q86XF0 187 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 ACBD4Q8NC06 268 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 MFSD8Q8NHS3 518 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 MCUR1Q96AQ8 359 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 MPP4Q96JB8 637 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 TACO1Q9BSH4 297 aaKnown RBP16.12■□□□□ 0.17
CLN3-239ENST00000628023 TMEM43Q9BTV4 400 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 AMBRA1Q9C0C7 1298 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 EMC3Q9P0I2 261 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 ACTR3BQ9P1U1 418 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 KLHL13Q9P2N7 655 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 RIMS3Q9UJD0 308 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 PROCRQ9UNN8 238 aa16.12■□□□□ 0.17
CLN3-239ENST00000628023 FAM32AQ9Y421 112 aaKnown RBP16.12■□□□□ 0.17
CLN3-239ENST00000628023 KPNA4O00629 521 aaPredicted RBP16.11■□□□□ 0.17
CLN3-239ENST00000628023 OR2T1O43869 369 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 DNAJC8O75937 253 aaPredicted RBP16.11■□□□□ 0.17
CLN3-239ENST00000628023 AKR7A3O95154 331 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 THY1P04216 161 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 ATP6V1B2P21281 511 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 AGTR1P30556 359 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 KIR2DL2P43627 348 aaPredicted RBP16.11■□□□□ 0.17
CLN3-239ENST00000628023 ST3GAL3Q11203 375 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 TRIM25Q14258 630 aaKnown RBP16.11■□□□□ 0.17
CLN3-239ENST00000628023 MTX3Q5HYI7 312 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 FAM69AQ5T7M9 428 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 PAQR6Q6TCH4 344 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 CDH24Q86UP0 819 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 TUSC5Q8IXB3 177 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 FAM86B1Q8N7N1 296 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 OR6K3Q8NGY3 331 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 SLC7A6OSQ96CW6 309 aaPredicted RBP16.11■□□□□ 0.17
CLN3-239ENST00000628023 PYURFQ96I23 114 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 LRGUKQ96M69 825 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 PTDSS2Q9BVG9 487 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 FNDC11Q9BVV2 318 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 TRIM15Q9C019 465 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 C12orf49Q9H741 205 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 GP6Q9HCN6 339 aa16.11■□□□□ 0.17
CLN3-239ENST00000628023 ANKRD17O75179 2603 aaKnown RBP16.1■□□□□ 0.17
CLN3-239ENST00000628023 J3KTA2 159 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 hCG_2039718K7EN88 272 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 LYPD3O95274 346 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 YES1P07947 543 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 THRBP10828 461 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms