RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GPX7Q96SL4 187 aaPredicted RBP12.87□□□□□ -0.35
USP39-220ENST00000613444 MRPS26Q9BYN8 205 aaKnown RBP12.87□□□□□ -0.35
USP39-220ENST00000613444 FKBP14Q9NWM8 211 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SEC14L4Q9UDX3 406 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 FZD7O75084 574 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 ENTPD6O75354 484 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 PPP1R3DO95685 299 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 MT-ATP6P00846 226 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 ATP6V1B1P15313 513 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SLC6A6P31641 620 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 AQP2P41181 271 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 NUDT6P53370 316 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 MLLT10P55197 1068 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 CSNK2BP67870 215 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 FOXK2Q01167 660 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 PIGFQ07326 219 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 DEFB109BQ30KR1 87 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SYT14P1Q58G82 188 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 C10orf53Q8N6V4 93 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 HAS2Q92819 552 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SLC38A2Q96QD8 506 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SIGLEC11Q96RL6 698 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 IFT27Q9BW83 186 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 AMBNQ9NP70 447 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 NRIP3Q9NQ35 241 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 DNAJC27Q9NZQ0 273 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 PSORS1C1Q9UIG5 152 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 GPR52Q9Y2T5 361 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 KCNMB2Q9Y691 235 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 KIAA1549Q9HCM3 1950 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SH3D21A4FU49 640 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 FAM47E-STBD1D6RA91 191 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 CEACAM4O75871 244 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 HMGN1P05114 100 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 IMPDH2P12268 514 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 HK1P19367 917 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 CCL11P51671 97 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 PRPS1P60891 318 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 TUBA4AP68366 448 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 ANKDD1AQ495B1 522 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 ZNF773Q6PK81 442 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 IGFL2Q6UWQ7 119 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 IGFN1Q86VF2 1251 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 OR2M7Q8NG81 312 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 RELTQ969Z4 430 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 FAM173AQ9BQD7 235 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 POTEKPQ9BYX7 375 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 ZFP64Q9NPA5 681 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 TAS2R5Q9NYW4 299 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 BLOC1S6Q9UL45 172 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 RPH3AQ9Y2J0 694 aaPredicted RBP12.86□□□□□ -0.35
USP39-220ENST00000613444 A0A087WXM4 84 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 PTGES3LE9PB15 166 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 BLOC1S5-TXNDC5H3BN57 136 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 OR2T1O43869 369 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 FAM20BO75063 409 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 AHSA1O95433 338 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 CLPTM1O96005 669 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 PEPDP12955 493 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SHC1P29353 583 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SRD5A2P31213 254 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SLC15A1P46059 708 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 B3GALT5-AS1P59052 145 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 RPL18Q07020 188 aaKnown RBP12.86□□□□□ -0.35
USP39-220ENST00000613444 C19orf57Q0VDD7 668 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 AADACL4Q5VUY2 407 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SLC6A19Q695T7 634 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 C3orf33Q6P1S2 294 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 DPY19L2P2Q6ZN68 376 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 SULF2Q8IWU5 870 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 MFSD8Q8NHS3 518 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 DDIT4LQ96D03 193 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 LRR1Q96L50 414 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 PRRG3Q9BZD7 231 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 CMC2Q9NRP2 79 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 CLN6Q9NWW5 311 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 BAIAP2Q9UQB8 552 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 TPRKBQ9Y3C4 175 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 ADAM18Q9Y3Q7 739 aa12.86□□□□□ -0.35
USP39-220ENST00000613444 TNRC6AQ8NDV7 1962 aaKnown RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 OR2M5A3KFT3 312 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 H3BML4 177 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 NME2P1O60361 137 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 SP1P08047 785 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 ZNF17P17021 662 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 NME2P22392 152 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 GRPRP30550 384 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 SELENBP1Q13228 472 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 GLYR1Q49A26 553 aaPredicted RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 SLC35F1Q5T1Q4 408 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 MAMDC2Q7Z304 686 aaPredicted RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 FAM122BQ7Z309 247 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 ATP6V1C2Q8NEY4 427 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 GGHQ92820 318 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 SLC25A36Q96CQ1 311 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 ZNF582Q96NG8 517 aaPredicted RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 HINT3Q9NQE9 182 aaKnown RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 SERINC1Q9NRX5 453 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 SCN3BQ9NY72 215 aa12.85□□□□□ -0.35
USP39-220ENST00000613444 DKKL1Q9UK85 242 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms