RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 SLC35A1P78382 337 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 LAPTM4AQ15012 233 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 FAM69AQ5T7M9 428 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 NSUN5P2Q63ZY6 315 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 HMBOX1Q6NT76 420 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 PPP4R4Q6NUP7 873 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 TMEM179BQ7Z7N9 219 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 C9orf106Q8NAJ2 232 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 OR4K5Q8NGD3 323 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 OR6S1Q8NH40 331 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 PRR7Q8TB68 274 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 LRTOMTQ8WZ04 291 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 CPNE4Q96A23 557 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 SGTBQ96EQ0 304 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 TAPBPLQ9BX59 468 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 NTN4Q9HB63 628 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 S100A14Q9HCY8 104 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 PAQR5Q9NXK6 330 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 DNAJB9Q9UBS3 223 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 SEC14L4Q9UDX3 406 aa17.9■□□□□ 0.46
SHKBP1-222ENST00000600320 SLC22A20A6NK97 555 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 OR2T1O43869 369 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 KRT36O76013 467 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 TOXO94900 526 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 AKR7A3O95154 331 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 SYNGR4O95473 234 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 GLI4P10075 376 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 MAKP20794 623 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 GRPRP30550 384 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 CASP6P55212 293 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 CTBP2P56545 445 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 PRKCDQ05655 676 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 ATP6AP1Q15904 470 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 ZFP1Q6P2D0 407 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 B3GNT6Q6ZMB0 384 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 AMIGO2Q86SJ2 522 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 RNF113BQ8IZP6 322 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 C10orf53Q8N6V4 93 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 LRRC17Q8N6Y2 441 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 TMEM99Q8N816 258 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 DMRTA2Q96SC8 542 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 CALHM2Q9HA72 323 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 TIGARQ9NQ88 270 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 MEMO1Q9Y316 297 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 ZNF175Q9Y473 711 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 HELZ2Q9BYK8 2649 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 ESPL1Q14674 2120 aa17.89■□□□□ 0.45
SHKBP1-222ENST00000600320 GNGT2O14610 69 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 CLOCKO15516 846 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 HNRNPRO43390 633 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 DNPH1O43598 174 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 OR7A10O76100 309 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 HOXD4P09016 255 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 PLA2G2AP14555 144 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 FUT1P19526 365 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 OMPP47874 163 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 P2RY4P51582 365 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 NUP107P57740 925 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 H3F3AP84243 136 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 CCDC103Q8IW40 242 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 OR9Q2Q8NGE9 314 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 WNT2BQ93097 391 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 PKP2Q99959 881 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 TTYH2Q9BSA4 534 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 KLHL4Q9C0H6 718 aa17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 MCTS1Q9ULC4 181 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-222ENST00000600320 MBD3L4A6NDZ8 208 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 MBD3L3A6NE82 208 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 MBD3L5A6NJ08 208 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 E9PLN8 166 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 M0R082 166 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 CCL21O00585 134 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 DEAF1O75398 565 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 LDLRP01130 860 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 IGF2P01344 180 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 FASP25445 335 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 GPR4P46093 362 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 SF3B4Q15427 424 aaKnown RBP eCLIP17.87■□□□□ 0.451e-6■■■■■ 60
SHKBP1-222ENST00000600320 OTUD3Q5T2D3 398 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 PAQR6Q6TCH4 344 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 FCRLAQ7L513 359 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 P4HA3Q7Z4N8 544 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 ZER1Q7Z7L7 766 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 HS3ST5Q8IZT8 346 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 MBD3L2Q8NHZ7 208 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 ZNF417Q8TAU3 575 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 RNF128Q8TEB7 428 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 ABHD3Q8WU67 409 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 BPIFA2Q96DR5 249 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 FAM46AQ96IP4 442 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 ZNF587Q96SQ5 575 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 GPA33Q99795 319 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 VKORC1Q9BQB6 163 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 PRRG4Q9BZD6 226 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 FKRPQ9H9S5 495 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 TMCC3Q9ULS5 477 aa17.87■□□□□ 0.45
SHKBP1-222ENST00000600320 ARHGAP21Q5T5U3 1957 aa17.86■□□□□ 0.45
SHKBP1-222ENST00000600320 AQP7P3A6NL99 342 aa17.86■□□□□ 0.45
SHKBP1-222ENST00000600320 OR10H3O60404 316 aa17.86■□□□□ 0.45
SHKBP1-222ENST00000600320 CCNB2O95067 398 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms