RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 HRNRQ86YZ3 2850 aaPredicted RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 AKAP6Q13023 2319 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 MTORP42345 2549 aa12.52□□□□□ -0.4
LIG1-218ENST00000599322 ZC3H12DA2A288 527 aaKnown RBP12.52□□□□□ -0.41
LIG1-218ENST00000599322 OR6C65A6NJZ3 312 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 ZNF716A6NP11 495 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 DEFB108AA8MXU0 73 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 M0QX08 132 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 SLC22A2O15244 555 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 LYZL6O75951 148 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 AKR7A3O95154 331 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 C8BP07358 591 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 CD3EP07766 207 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 IL1RL1Q01638 556 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 ACKR1Q16570 336 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 DEFB113Q30KQ7 82 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 OR7E24Q6IFN5 339 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 ERICH5Q6P6B1 374 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 AAED1Q7RTV5 226 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 ATG4DQ86TL0 474 aaPredicted RBP12.52□□□□□ -0.41
LIG1-218ENST00000599322 LSMEM1Q8N8F7 131 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 OR10A6Q8NH74 314 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 MFSD8Q8NHS3 518 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 NSRP1Q9H0G5 558 aaKnown RBP12.52□□□□□ -0.41
LIG1-218ENST00000599322 KAT8Q9H7Z6 458 aaKnown RBP12.52□□□□□ -0.41
LIG1-218ENST00000599322 SAR1AQ9NR31 198 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 TAS2R16Q9NYV7 291 aa12.52□□□□□ -0.41
LIG1-218ENST00000599322 ING1Q9UK53 422 aaPredicted RBP12.52□□□□□ -0.41
LIG1-218ENST00000599322 LOC100653049A0A140TA62 436 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 A0A1B0GWA3 101 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 AQP7P3A6NL99 342 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 ZNF814B7Z6K7 855 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 AKAP8O43823 692 aaKnown RBP12.51□□□□□ -0.41
LIG1-218ENST00000599322 SMPD2O60906 423 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 KRT34O76011 436 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 MFN2O95140 757 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 ATE1O95260 518 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 THBDP07204 575 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 KLK2P20151 261 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 PCGF2P35227 344 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 HOXC5Q00444 222 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 FAPQ12884 760 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 C1DQ13901 141 aaKnown RBP12.51□□□□□ -0.41
LIG1-218ENST00000599322 SLC17A1Q14916 467 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 PPA1Q15181 289 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 TAB1Q15750 504 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 TIMM23BQ5SRD1 257 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 NANOGP8Q6NSW7 305 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 KLHL17Q6TDP4 642 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 KLHL24Q6TFL4 600 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 ZNF704Q6ZNC4 412 aaPredicted RBP12.51□□□□□ -0.41
LIG1-218ENST00000599322 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.51□□□□□ -0.41
LIG1-218ENST00000599322 RETREG3Q86VR2 466 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 P3H2Q8IVL5 708 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 DEPDC4Q8N2C3 294 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 C10orf53Q8N6V4 93 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 TMEM99Q8N816 258 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 POMGNT2Q8NAT1 580 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 OR9K2Q8NGE7 335 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 OR8J3Q8NGG0 315 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 LRRC58Q96CX6 371 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 CCL19Q99731 98 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 IKZF5Q9H5V7 419 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 NANOGQ9H9S0 305 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 FLVCR1Q9Y5Y0 555 aa12.51□□□□□ -0.41
LIG1-218ENST00000599322 TRAV36DV7A0A075B6V5 113 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 AIM2O14862 343 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 KLF4O43474 513 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 TPST1O60507 370 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 FMO6PO60774 539 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 IGHV3-9P01782 118 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 NQO1P15559 274 aaKnown RBP12.5□□□□□ -0.41
LIG1-218ENST00000599322 ZNF43P17038 809 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 IFNA8P32881 189 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 RPS5P46782 204 aaKnown RBP12.5□□□□□ -0.41
LIG1-218ENST00000599322 OR1Q1Q15612 314 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 TSC22D1Q15714 1073 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 ADRM1Q16186 407 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 VMACQ2NL98 169 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 SWT1Q5T5J6 900 aaKnown RBP12.5□□□□□ -0.41
LIG1-218ENST00000599322 C1QTNF12Q5T7M4 302 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 FAM69AQ5T7M9 428 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 REP15Q6BDI9 236 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 C6orf89Q6UWU4 347 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 ARPINQ7Z6K5 226 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 SNX32Q86XE0 403 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 SMYD1Q8NB12 490 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 TMEM171Q8WVE6 324 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 PROX1Q92786 737 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 TMEM45BQ96B21 275 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 MCHR1Q99705 422 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 PIP5K1AQ99755 562 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 ASPNQ9BXN1 380 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 BAG5Q9UL15 447 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 CHST2Q9Y4C5 530 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 RNF115Q9Y4L5 304 aa12.5□□□□□ -0.41
LIG1-218ENST00000599322 MAGED1Q9Y5V3 778 aaPredicted RBP12.5□□□□□ -0.41
LIG1-218ENST00000599322 OR5H1A6NKK0 313 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 TMEM229AB2RXF0 380 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 NDUFAB1O14561 156 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms