RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 RBM24Q9BX46 236 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 PIGMQ9H3S5 423 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 C12orf49Q9H741 205 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 GORASP2Q9H8Y8 452 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 RIMS3Q9UJD0 308 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 DOCK7Q96N67 2140 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 IGKV3D-15A0A087WSY6 115 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 ARPC2O15144 300 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 DNPH1O43598 174 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 CHP2O43745 196 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 PRSS23O95084 383 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 PLGP00747 810 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 BGLAPP02818 100 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 GPIP06744 558 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 CD8BP10966 210 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 PRF1P14222 555 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 UQCRC1P31930 480 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 CTBP2P56545 445 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC17A1Q14916 467 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 RNPS1Q15287 305 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 OTUD3Q5T2D3 398 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 GTF2IRD2BQ6EKJ0 949 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 PAQR6Q6TCH4 344 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 MEX3BQ6ZN04 569 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 C22orf34Q6ZV56 151 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 GTF2IRD2Q86UP8 949 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 MCEMP1Q8IX19 187 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 DMRTC2Q8IXT2 367 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF295-AS1Q8N0V1 137 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 OR6K3Q8NGY3 331 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 MFSD8Q8NHS3 518 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 C7orf34Q96L11 122 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 MOGAT1Q96PD6 335 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF426Q9BUY5 554 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 CHST11Q9NPF2 352 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 MEPEQ9NQ76 525 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 GLRX2Q9NS18 164 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 ADPRHL2Q9NX46 363 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 GALNT8Q9NY28 637 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 RHCGQ9UBD6 479 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 PROCRQ9UNN8 238 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 EMC9Q9Y3B6 208 aa12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 FLNBO75369 2602 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 SPTBN1Q01082 2364 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-217ENST00000598558 NBPF19A0A087WUL8 3843 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 MED12LQ86YW9 2145 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 TRAV36DV7A0A075B6V5 113 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 AQP7P3A6NL99 342 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF724A8MTY0 619 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 AHSA1O95433 338 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 ATP6V1B2P21281 511 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 GRPRP30550 384 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC16A1P53985 500 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 UGT2B15P54855 530 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 BNIP1Q12981 228 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 PDK3Q15120 406 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 IFI44LQ53G44 452 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 SWT1Q5T5J6 900 aaKnown RBP12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 EEF1A1P5Q5VTE0 462 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 TMEM255BQ8WV15 326 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 SPOCK3Q9BQ16 436 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 TMEM43Q9BTV4 400 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 C1orf21Q9H246 121 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 GP6Q9HCN6 339 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 MAN2C1Q9NTJ4 1040 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 NDE1Q9NXR1 346 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 KLHL9Q9P2J3 617 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 PRSS50Q9UI38 385 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 V9GYQ6 96 aa12.61□□□□□ -0.39
SHKBP1-217ENST00000598558 MS4A18H0YCH9 400 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 M0R082 166 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 EIF1BO60739 113 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 DIRAS1O95057 198 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 OR5F1O95221 314 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 HPRP00739 348 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 SEMG1P04279 462 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 CCKARP32238 428 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 TAS2R41P59536 307 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 VLDLRP98155 873 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 EXOC3L2Q2M3D2 409 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 MS4A18Q3C1V0 323 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 TMEM201Q5SNT2 666 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 FAM69AQ5T7M9 428 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 PGM2L1Q6PCE3 622 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 TFAP2EQ6VUC0 442 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 NHLRC1Q6VVB1 395 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 CYP2R1Q6VVX0 501 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 FKBP9P1Q75LS8 142 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 WDFY1Q8IWB7 410 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 LRRC17Q8N6Y2 441 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 PFN4Q8NHR9 129 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF417Q8TAU3 575 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 LINC01560Q8TB33 94 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 PIGXQ8TBF5 258 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 LZICQ8WZA0 190 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 ZHX1-C8orf76Q96EF9 292 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF385AQ96PM9 386 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF587Q96SQ5 575 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 NAA11Q9BSU3 229 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 THTPAQ9BU02 230 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms