RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 OR4D11Q8NGI4 311 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 OR6T1Q8NGN1 323 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 RASSF5Q8WWW0 418 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 MED18Q9BUE0 208 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 SF3B5Q9BWJ5 86 aaKnown RBP14.29□□□□□ -0.12
TRIM28-213ENST00000598355 POLDIP3Q9BY77 421 aaKnown RBP14.29□□□□□ -0.12
TRIM28-213ENST00000598355 CMTM6Q9NX76 183 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 MALT1Q9UDY8 824 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 AP3M1Q9Y2T2 418 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 CELSR1Q9NYQ6 3014 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ELOA3DA6NLF2 546 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-213ENST00000598355 LYPD3O95274 346 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 AHSA1O95433 338 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 NCALDP61601 193 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 GNGT1P63211 74 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 POU4F3Q15319 338 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 OR1Q1Q15612 314 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 OR7A5Q15622 319 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ELOA3BQ3SY89 546 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 OTUD3Q5T2D3 398 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-213ENST00000598355 SFRP5Q5T4F7 317 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ZNF613Q6PF04 617 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 LINC00114Q6XXX2 140 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 PIGWQ7Z7B1 504 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ALPK2Q86TB3 2170 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 TSPYL5Q86VY4 417 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-213ENST00000598355 CXorf67Q86X51 503 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-213ENST00000598355 CDC20BQ86Y33 519 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 SLC15A3Q8IY34 581 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 TMEM99Q8N816 258 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ELOA3Q8NG57 546 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 OR6S1Q8NH40 331 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 TMEM45BQ96B21 275 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 SLC47A1Q96FL8 570 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 NAA11Q9BSU3 229 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-213ENST00000598355 PRR14Q9BWN1 585 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 KLHL4Q9C0H6 718 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ZNF226Q9NYT6 803 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 ABCD2Q9UBJ2 740 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 RPS6KB2Q9UBS0 482 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 PRSS50Q9UI38 385 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 SLC13A4Q9UKG4 626 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 SLC9A8Q9Y2E8 581 aa14.28□□□□□ -0.12
TRIM28-213ENST00000598355 CCT8L1PA6NM43 557 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 NME4O00746 187 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 CHP2O43745 196 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 AKR7A3O95154 331 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 ITGADQ13349 1161 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 FAM69AQ5T7M9 428 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 SEZ6L2Q6UXD5 910 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 MICU2Q8IYU8 434 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 ZIC4Q8N9L1 334 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 STEAP2Q8NFT2 490 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 OR2T12Q8NG77 320 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 KTI12Q96EK9 354 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-213ENST00000598355 MCHR1Q99705 422 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 TMEM43Q9BTV4 400 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF426Q9BUY5 554 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 TAPBPLQ9BX59 468 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 HDHD5Q9BXW7 423 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 ACTR6Q9GZN1 396 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 FAM107BQ9H098 131 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 PLEKHF2Q9H8W4 249 aa14.27□□□□□ -0.13
TRIM28-213ENST00000598355 NOSIPQ9Y314 301 aaKnown RBP14.27□□□□□ -0.13
TRIM28-213ENST00000598355 DSCAMO60469 2012 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 PDLIM1O00151 329 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 AIM2O14862 343 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 VAMP5O95183 116 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 THY1P04216 161 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 CDH12P55289 794 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 FBXW9Q5XUX1 488 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 CPLX4Q7Z7G2 160 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 ADPRHL1Q8NDY3 354 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 OR9K2Q8NGE7 335 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 NRGNQ92686 78 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 NINJ1Q92982 152 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 APH1AQ96BI3 265 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF775Q96BV0 537 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-213ENST00000598355 CMTM5Q96DZ9 223 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 SLC41A3Q96GZ6 507 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 HOPXQ9BPY8 73 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-213ENST00000598355 USB1Q9BQ65 265 aaKnown RBP14.26□□□□□ -0.13
TRIM28-213ENST00000598355 EFCAB1Q9HAE3 211 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 TMEM27Q9HBJ8 222 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 FAM53CQ9NYF3 392 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 PLCE1Q9P212 2302 aa14.26□□□□□ -0.13
TRIM28-213ENST00000598355 TRAV36DV7A0A075B6V5 113 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ELOVL7A1L3X0 281 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 KLF4O43474 513 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 OR2T1O43869 369 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ADAP00813 363 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 IGHV1-2P23083 117 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 DNAJA1P31689 397 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 KDELR2P33947 212 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 RPS5P46782 204 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 SLC7A2P52569 658 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 TESK1Q15569 626 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ENTPD8Q5MY95 495 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ANKRD34AQ69YU3 496 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 WDR88Q6ZMY6 472 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms