RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RPS4XP62701 263 aaKnown RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 KRTAP1-1Q07627 177 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 MERTKQ12866 999 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 RNPS1Q15287 305 aaKnown RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 CLEC12BQ2HXU8 276 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 VMACQ2NL98 169 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 ERICH5Q6P6B1 374 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 HACD2Q6Y1H2 254 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 GRINAQ7Z429 371 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 PATL1Q86TB9 770 aaKnown RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 CALHM3Q86XJ0 350 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 ARMC8Q8IUR7 673 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 BHLHE22Q8NFJ8 381 aaPredicted RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 ZNF300Q96RE9 604 aaPredicted RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 HOPXQ9BPY8 73 aaPredicted RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 TACO1Q9BSH4 297 aaKnown RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 HDHD5Q9BXW7 423 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 TIGARQ9NQ88 270 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 SERINC1Q9NRX5 453 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 KLHL13Q9P2N7 655 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 ING1Q9UK53 422 aaPredicted RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 CHST2Q9Y4C5 530 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 RNF115Q9Y4L5 304 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 FN1P02751 2386 aaKnown RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 DPRXA6NFQ7 191 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 OVOL3O00110 214 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 NDUFS7O75251 213 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 MFN2O95140 757 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 CD3EP07766 207 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 DANCRP0C864 163 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 GKN3PP0CG01 181 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 PTNP21246 168 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 IL32P24001 234 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 FKBP2P26885 142 aaKnown RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 ACAA2P42765 397 aaKnown RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 SLC1A3P43003 542 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 NUDT2P50583 147 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 COPZ1P61923 177 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 FAPQ12884 760 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 FAM91A1Q658Y4 838 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 BHLHA15Q7RTS1 189 aaPredicted RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 KBTBD8Q8NFY9 601 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 SLC25A43Q8WUT9 341 aaPredicted RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 DNAJA3Q96EY1 480 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 ZNF583Q96ND8 569 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 PSD2Q9BQI7 771 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 PIF1Q9H611 641 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 EVA1AQ9H8M9 152 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 CHRNA9Q9UGM1 479 aa11.05□□□□□ -0.64
UPF1-203ENST00000594504 MAGED1Q9Y5V3 778 aaPredicted RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 SPIN1Q9Y657 262 aaPredicted RBP11.05□□□□□ -0.64
UPF1-203ENST00000594504 FLNAP21333 2647 aaKnown RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 FAM220BPB1ANY3 271 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 M0QX08 132 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 NDUFAB1O14561 156 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 RAMP1O60894 148 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 LYZL6O75951 148 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 SLC7A1P30825 629 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 ACVR1BP36896 505 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 POLR2HP52434 150 aaKnown RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 MAP2K6P52564 334 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 BSPH1Q075Z2 132 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 DMTNQ08495 405 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 ITGADQ13349 1161 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 VEZF1Q14119 521 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 PGGHGQ32M88 737 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 WBP2NLQ6ICG8 309 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 ADAM5Q6NVV9 412 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 C8orf82Q6P1X6 216 aaPredicted RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 SEZ6L2Q6UXD5 910 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 CCDC80Q76M96 950 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 SLC15A3Q8IY34 581 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 CCDC197Q8NCU1 140 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 OR2T12Q8NG77 320 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 SMAP2Q8WU79 429 aaPredicted RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 HSD17B8Q92506 261 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 KISS1RQ969F8 398 aaPredicted RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 FBXW5Q969U6 566 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 OR5B2Q96R09 309 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 RSPO3Q9BXY4 272 aaPredicted RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 CTPS2Q9NRF8 586 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 CMTM6Q9NX76 183 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 GDF2Q9UK05 429 aaPredicted RBP11.04□□□□□ -0.64
UPF1-203ENST00000594504 SLC13A4Q9UKG4 626 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 USF3Q68DE3 2245 aa11.04□□□□□ -0.64
UPF1-203ENST00000594504 CR1P17927 2039 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 TMED7-TICAM2A0A0A6YYA0 188 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 CCT8L1PA6NM43 557 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 SMAD9O15198 467 aaKnown RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 FRS3O43559 492 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 TPST1O60507 370 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 CD8AP01732 235 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 C8BP07358 591 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 PRG2P13727 222 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 IGHV1-2P23083 117 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 TACR3P29371 465 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 CLK1P49759 484 aaKnown RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 SLC7A2P52569 658 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 RAC3P60763 192 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 RASGEF1BQ0VAM2 473 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms