RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	WDR31	Q8NA23	367 aa		11.88	□□□□□ -0.51
SS18-222	ENST00000582792	OR5AK3P	Q8NH89	298 aa		11.88	□□□□□ -0.51
SS18-222	ENST00000582792	MIPOL1	Q8TD10	442 aa		11.88	□□□□□ -0.51
SS18-222	ENST00000582792	PRR14	Q9BWN1	585 aa		11.88	□□□□□ -0.51
SS18-222	ENST00000582792	HEATR1	Q9H583	2144 aa	Known RBP	11.88	□□□□□ -0.51
SS18-222	ENST00000582792	CCDC167	Q9P0B6	97 aa		11.88	□□□□□ -0.51
SS18-222	ENST00000582792	SPIN1	Q9Y657	262 aa	Predicted RBP	11.88	□□□□□ -0.51
SS18-222	ENST00000582792	NUP214	P35658	2090 aa	Predicted RBP	11.88	□□□□□ -0.51
SS18-222	ENST00000582792	ARFGEF3	Q5TH69	2177 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	LOC100289279	A0A1B0GTE1	492 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	PDLIM1	O00151	329 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	RFXANK	O14593	260 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	DNPH1	O43598	174 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	FCMR	O60667	390 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	STX11	O75558	287 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	UGT2B17	O75795	530 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	CPSF4	O95639	269 aa	Known RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	AK1	P00568	194 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	CSTA	P01040	98 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	UBTFL6	P0CB48	400 aa	Predicted RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	HNF1A	P20823	631 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	APOBEC1	P41238	236 aa	Known RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	NR4A2	P43354	598 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	PDLIM4	P50479	330 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	RPS26	P62854	115 aa	Known RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	MAPRE2	Q15555	327 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	SWI5	Q1ZZU3	235 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	SAXO2	Q658L1	398 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	C6orf120	Q7Z4R8	191 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	ANKRD46	Q86W74	232 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	C17orf78	Q8N4C9	275 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	C1orf162	Q8NEQ5	155 aa	Predicted RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	OR52E4	Q8NGH9	312 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	GTF2H4	Q92759	462 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	MSI2	Q96DH6	328 aa	Known RBP	11.87	□□□□□ -0.51
SS18-222	ENST00000582792	NEURL3	Q96EH8	262 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	ARL5B	Q96KC2	179 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	PANX1	Q96RD7	426 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	PIMREG	Q9BSJ6	248 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	CCDC106	Q9BWC9	280 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	SERHL2	Q9H4I8	314 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	SLC17A5	Q9NRA2	495 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	CHRNA9	Q9UGM1	479 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	AMDHD2	Q9Y303	409 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	HDGFL3	Q9Y3E1	203 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	FKBP7	Q9Y680	259 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	GMEB1	Q9Y692	573 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792	TENM1	Q9UKZ4	2725 aa		11.87	□□□□□ -0.51
SS18-222	ENST00000582792		A0A096LPI6	279 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	RNF103-CHMP3	A0A140T963	221 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	DUXA	A6NLW8	204 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	ATP6V1G2-DDX39B	F2Z307	99 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	KRT75	O95678	551 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	FAM107A	O95990	144 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	AGR2	O95994	175 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	APEH	P13798	732 aa	Known RBP	11.86	□□□□□ -0.51
SS18-222	ENST00000582792	MATN1	P21941	496 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	FKBP2	P26885	142 aa	Known RBP	11.86	□□□□□ -0.51
SS18-222	ENST00000582792	PGM1	P36871	562 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	SLC25A3	Q00325	362 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	KLF10	Q13118	480 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	MST1L	Q2TV78	715 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	ARHGAP11B	Q3KRB8	267 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	COQ5	Q5HYK3	327 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	LRIF1	Q5T3J3	769 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	C1QTNF12	Q5T7M4	302 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	CASP12	Q6UXS9	341 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	EIF3M	Q7L2H7	374 aa	Known RBP	11.86	□□□□□ -0.51
SS18-222	ENST00000582792	CCDC103	Q8IW40	242 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	DPP10	Q8N608	796 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	ANKS4B	Q8N8V4	417 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	FAM71C	Q8NEG0	241 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	VPS33A	Q96AX1	596 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	DNAJA3	Q96EY1	480 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	SORCS2	Q96PQ0	1159 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	CCT8L2	Q96SF2	557 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	ZNF350	Q9GZX5	532 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	FAM107B	Q9H098	131 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	CTPS2	Q9NRF8	586 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	LEF1	Q9UJU2	399 aa	Predicted RBP	11.86	□□□□□ -0.51
SS18-222	ENST00000582792	MKLN1	Q9UL63	735 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	ARL2BP	Q9Y2Y0	163 aa		11.86	□□□□□ -0.51
SS18-222	ENST00000582792	IGHV4-61	A0A0C4DH41	118 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	BBIP1	A8MTZ0	92 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	NR5A2	O00482	541 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	GUSB	P08236	651 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	HOXB9	P17482	250 aa	Predicted RBP	11.85	□□□□□ -0.51
SS18-222	ENST00000582792	SOAT1	P35610	550 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	CLK1	P49759	484 aa	Known RBP	11.85	□□□□□ -0.51
SS18-222	ENST00000582792	ANXA11	P50995	505 aa	Known RBP	11.85	□□□□□ -0.51
SS18-222	ENST00000582792	H3F3A	P84243	136 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	MAPK14	Q16539	360 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	C9orf135	Q5VTT2	229 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	LIPN	Q5VXI9	398 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	ZNF621	Q6ZSS3	439 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	OLIG3	Q7RTU3	272 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	GRINA	Q7Z429	371 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	ZNF563	Q8TA94	476 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	OIT3	Q8WWZ8	545 aa		11.85	□□□□□ -0.51
SS18-222	ENST00000582792	FBXO17	Q96EF6	278 aa		11.85	□□□□□ -0.51

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