RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 RASD1Q9Y272 281 aa12.74□□□□□ -0.37
SMARCE1-213ENST00000578044 ZNF443Q9Y2A4 671 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-213ENST00000578044 CCT8L1PA6NM43 557 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 TMEM229AB2RXF0 380 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 C9JVG2 144 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 H7C417 338 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 RAMP1O60894 148 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 C1QCP02747 245 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 BMP4P12644 408 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 CRATP43155 626 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 P2RY4P51582 365 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 CDH11P55287 796 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 NME5P56597 212 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 PPP2R2BQ00005 443 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 FAPQ12884 760 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 RGNQ15493 299 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 SLC9B1Q4ZJI4 515 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 OTUD3Q5T2D3 398 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 AGBL2Q5U5Z8 902 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 NXNQ6DKJ4 435 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 ZNF836Q6ZNA1 936 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 MAVSQ7Z434 540 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 ZIC4Q8N9L1 334 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 BHLHE22Q8NFJ8 381 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 OR9K2Q8NGE7 335 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 BBS10Q8TAM1 723 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 MAGEE2Q8TD90 523 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 ZNF775Q96BV0 537 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 ADAD1Q96M93 576 aaKnown RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 REG4Q9BYZ8 158 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 FKRPQ9H9S5 495 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 SLC17A5Q9NRA2 495 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 SLC7A10Q9NS82 523 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 RLIMQ9NVW2 624 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 UPB1Q9UBR1 384 aa12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 FBXO9Q9UK97 447 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-213ENST00000578044 ANK3Q12955 4377 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 ZC3H12DA2A288 527 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 CLIC1O00299 241 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 OR2T1O43869 369 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 RAD51DO75771 328 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 WNT11O96014 354 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 KITP10721 976 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 ETFAP13804 333 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 PRKAR1BP31321 381 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 SH3BGRP55822 239 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 PRPS1P60891 318 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 KRTAP1-1Q07627 177 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 CASP12Q6UXS9 341 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 ATG4DQ86TL0 474 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 WDR31Q8NA23 367 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 OR6S1Q8NH40 331 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 C3orf49Q96BT1 292 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 TMEM19Q96HH6 336 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 HS6ST2Q96MM7 605 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 OR52B2Q96RD2 323 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 CCDC28BQ9BUN5 200 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 TAPBPLQ9BX59 468 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 LINC00470Q9BZP3 86 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 PAIP1Q9H074 479 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 RCE1Q9Y256 329 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 CHST2Q9Y4C5 530 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 PCDHB14Q9Y5E9 798 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 USH1CQ9Y6N9 552 aa12.72□□□□□ -0.37
SMARCE1-213ENST00000578044 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.72□□□□□ -0.371e-10■■■■□ 23.8
SMARCE1-213ENST00000578044 STAB1Q9NY15 2570 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ELOA3DA6NLF2 546 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 FTCDNL1E5RQL4 147 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 E7EQL1 145 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 RPL36A-HNRNPH2H7BZ11 118 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 FRS3O43559 492 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 IGHV4-39P01824 125 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 BCHEP06276 602 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ATP4BP51164 291 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 STX1BP61266 288 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 CEACAM7Q14002 265 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 VEZF1Q14119 521 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 MFSD13AQ14CX5 517 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ELOA3BQ3SY89 546 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 TSPO2Q5TGU0 170 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 C1orf140Q5VVS0 124 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 TMEM225Q6GV28 225 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 BLOC1S3Q6QNY0 202 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 SLC22A25Q6T423 547 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 NET1Q7Z628 596 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 VRK2Q86Y07 508 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 FBXL14Q8N1E6 418 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 MUC15Q8N387 334 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 GOLGA6L1Q8N7Z2 621 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 TMEM99Q8N816 258 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ADPRHL1Q8NDY3 354 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ELOA3Q8NG57 546 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 PNPT1Q8TCS8 783 aaKnown RBP12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 NEUROG1Q92886 237 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 TMEM38AQ9H6F2 299 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 TCF7L2Q9NQB0 619 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 CRNNQ9UBG3 495 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 CORO2BQ9UQ03 480 aa12.71□□□□□ -0.37
SMARCE1-213ENST00000578044 ARPC4-TTLL3A0A0A6YYG9 625 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms