RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NPTX1Q15818 432 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 SLC25A35Q3KQZ1 300 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 IFI44LQ53G44 452 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 SWT1Q5T5J6 900 aaKnown RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 STK35Q8TDR2 534 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 GEMIN6Q8WXD5 167 aaKnown RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 LRRC46Q96FV0 321 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 HSH2DQ96JZ2 352 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 NSMCE2Q96MF7 247 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 NAA11Q9BSU3 229 aaPredicted RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 POTEKPQ9BYX7 375 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 C1orf21Q9H246 121 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 RNF122Q9H9V4 155 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 GLRX2Q9NS18 164 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 CLEC4AQ9UMR7 237 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 PRPF19Q9UMS4 504 aaKnown RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 EMC9Q9Y3B6 208 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 SNX13Q9Y5W8 968 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 A0A1W2PNV4 684 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 ZC3H12DA2A288 527 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 TRAPPC13A5PLN9 417 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 EEF1E1-BLOC1S5C9J1V9 151 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 EEF1E1O43324 174 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 TPST2O60704 377 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 CTAG2O75638 210 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 IL18BPO95998 194 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 IFNW1P05000 195 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 GPIP06744 558 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 CRHP06850 196 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 CDH12P55289 794 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 FOXF2Q12947 444 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 CEACAM7Q14002 265 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 RNPS1Q15287 305 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 OR7A5Q15622 319 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 DNAL1Q4LDG9 190 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 C1orf140Q5VVS0 124 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 C5orf46Q6UWT4 87 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 C6orf89Q6UWU4 347 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 VTCN1Q7Z7D3 282 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 SLC43A2Q8N370 569 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 ADAMTS16Q8TE57 1224 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 SLC38A4Q969I6 547 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 GMPPAQ96IJ6 420 aaPredicted RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 EPYCQ99645 322 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 THTPAQ9BU02 230 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 POLDIP3Q9BY77 421 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 POLR2J2Q9GZM3 115 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 POLR2J3Q9H1A7 115 aaKnown RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 LIME1Q9H400 295 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 TAS2R1Q9NYW7 299 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 C6orf203Q9P0P8 240 aaPredicted RBP15.39■□□□□ 0.05
CLN3-217ENST00000565354 TRAPPC4Q9Y296 219 aa15.39■□□□□ 0.05
CLN3-217ENST00000565354 TMEM229AB2RXF0 380 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 ARPC2O15144 300 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 DNPH1O43598 174 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 CHP2O43745 196 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 EIF1BO60739 113 aaKnown RBP15.38■□□□□ 0.05
CLN3-217ENST00000565354 SMNDC1O75940 238 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLN3-217ENST00000565354 PDE5AO76074 875 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 PRKD3O94806 890 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 FPR1P21462 350 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 RASSF2P50749 326 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 CBX1P83916 185 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 RASGEF1BQ0VAM2 473 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 TMEM201Q5SNT2 666 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 TTC33Q6PID6 262 aaPredicted RBP15.38■□□□□ 0.05
CLN3-217ENST00000565354 LIX1LQ8IVB5 337 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 RNF128Q8TEB7 428 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 SLC25A36Q96CQ1 311 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 SLC41A3Q96GZ6 507 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 PCDHAC1Q9H158 963 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 GORASP2Q9H8Y8 452 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 KLHL9Q9P2J3 617 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 SLC7A7Q9UM01 511 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 V9GYQ6 96 aa15.38■□□□□ 0.05
CLN3-217ENST00000565354 DOCK7Q96N67 2140 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 A0A087WUJ7 227 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 SMAD9O15198 467 aaKnown RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 ATP5HO75947 161 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 IMPDH2P12268 514 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 RPS5P46782 204 aaKnown RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 FAM214BQ7L5A3 538 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 CYP4Z1Q86W10 505 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 LSRQ86X29 649 aaPredicted RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 C10orf53Q8N6V4 93 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 RELL2Q8NC24 303 aaPredicted RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 PIGXQ8TBF5 258 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 ABHD3Q8WU67 409 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 ALPK1Q96QP1 1244 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 TACO1Q9BSH4 297 aaKnown RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 MUC13Q9H3R2 512 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 PIGMQ9H3S5 423 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 DCAF13Q9NV06 445 aaKnown RBP15.37■□□□□ 0.05
CLN3-217ENST00000565354 PROCRQ9UNN8 238 aa15.37■□□□□ 0.05
CLN3-217ENST00000565354 MPDZO75970 2070 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 TRAV36DV7A0A075B6V5 113 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 LIPT2A6NK58 231 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 OR2T1O43869 369 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 SS18L1O75177 396 aaPredicted RBP15.36■□□□□ 0.05
CLN3-217ENST00000565354 OR5F1O95221 314 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms