RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 COPZ1P61923 177 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 EPS8Q12929 822 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 KRTAP24-1Q3LI83 254 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 C1QTNF12Q5T7M4 302 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 TMEM225Q6GV28 225 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 VHLLQ6RSH7 139 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 LRRC74BQ6ZQY2 392 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 PEX5LQ8IYB4 626 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 ANKS4BQ8N8V4 417 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 TRIM44Q96DX7 344 aaPredicted RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 ZNF385AQ96PM9 386 aaKnown RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 SORCS2Q96PQ0 1159 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 SLC38A2Q96QD8 506 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 ZBTB18Q99592 522 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 SF3B5Q9BWJ5 86 aaKnown RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 MTHFD2LQ9H903 347 aaPredicted RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 OBP2BQ9NPH6 170 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 BTNL2Q9UIR0 455 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 IGHV1-18A0A0C4DH31 117 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 LIPT2A6NK58 231 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 AQP7P3A6NL99 342 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 NDUFS8O00217 210 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 FAAHO00519 579 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 BIRC5O15392 142 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 LGI1O95970 557 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 CRYAAP02489 173 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 GKN3PP0CG01 181 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 NCF2P19878 526 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 IGFBP5P24593 272 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 SERPINF1P36955 418 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 NR4A2P43354 598 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 UFM1P61960 85 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 VSNL1P62760 191 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 TXNL4AP83876 142 aaKnown RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 SRSF2Q01130 221 aaKnown RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 GSTA3Q16772 222 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 SWI5Q1ZZU3 235 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 KRT71Q3SY84 523 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 TBRG1Q3YBR2 411 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 LIN52Q52LA3 116 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 FAM120AOSQ5T036 256 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 AP1ARQ63HQ0 302 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 NIPAL3Q6P499 406 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 ZNF440Q8IYI8 595 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 KIRREL3Q8IZU9 778 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 ALKBH3Q96Q83 286 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 OR52E6Q96RD3 313 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 C19orf24Q9BVV8 132 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 CACYBPQ9HB71 228 aaKnown RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 RLIMQ9NVW2 624 aa11.33□□□□□ -0.6
SF3B3-202ENST00000562722 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-202ENST00000562722 PLCE1Q9P212 2302 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 RGS16O15492 202 aaPredicted RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 SNUPNO95149 360 aaKnown RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 KRT75O95678 551 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 OR4A8P0C604 315 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 BGNP21810 368 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 RPS4Y1P22090 263 aaKnown RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 CDKN2CP42773 168 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 SELENOPP49908 381 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 TUBA1BP68363 451 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 TUBA4AP68366 448 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 LGALS3BPQ08380 585 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 BNIP2Q12982 314 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 MST1LQ2TV78 715 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 COX20Q5RI15 118 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 PRAMEF8Q5VWM4 474 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 PRAMEF7Q5VXH5 474 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 WBP2NLQ6ICG8 309 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 TUBA1AQ71U36 451 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 VRK2Q86Y07 508 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 ZIC4Q8N9L1 334 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 OR1K1Q8NGR3 316 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 OR52P1PQ8NH57 321 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 MSI2Q96DH6 328 aaKnown RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 TEX37Q96LM6 180 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 FOXN4Q96NZ1 517 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 SORT1Q99523 831 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 PAIP2Q9BPZ3 127 aaKnown RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 KATNB1Q9BVA0 655 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 C20orf27Q9GZN8 174 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 ADAM19Q9H013 955 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 CENPHQ9H3R5 247 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 MYOZ1Q9NP98 299 aaPredicted RBP11.32□□□□□ -0.6
SF3B3-202ENST00000562722 CA10Q9NS85 328 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 P2RX2Q9UBL9 471 aa11.32□□□□□ -0.6
SF3B3-202ENST00000562722 A0A096LPE4 126 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 IGHV4-61A0A0C4DH41 118 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 A0A1W2PPZ6 126 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 LOC390937A0A1W2PQ73 354 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 SLC35F4A4IF30 521 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 A8MVM7 634 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 VWC2LB2RUY7 222 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 B9A039 149 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 NR5A2O00482 541 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 VAMP5O95183 116 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 TGFAP01135 160 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 PGRP06401 933 aa11.31□□□□□ -0.6
SF3B3-202ENST00000562722 ERCC1P07992 297 aaPredicted RBP11.31□□□□□ -0.6
SF3B3-202ENST00000562722 GTF2E2P29084 291 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms