RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CEP76Q8TAP6 659 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 CCDC74AQ96AQ1 378 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SHDQ96IW2 340 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 PDCD1LG2Q9BQ51 273 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 CCDC32Q9BV29 185 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 CHRDQ9H2X0 955 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SRA1Q9HD15 236 aaKnown RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 NANSQ9NR45 359 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 COPS3Q9UNS2 423 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 IGKV3D-11A0A0A0MRZ8 115 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 A8MV72 311 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 GDF9O60383 454 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 RGS9O75916 674 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 TIAF1O95411 115 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 IFI6P09912 130 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 PSMD4P55036 377 aaKnown RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 ZNF117Q03924 483 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SELENBP1Q13228 472 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SHBQ15464 509 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SDK2Q58EX2 2172 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 LEG1Q6P5S2 330 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ZNF574Q6ZN55 896 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 NPEPL1Q8NDH3 523 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ABHD4Q8TB40 342 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ZNF578Q96N58 590 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 SLC46A1Q96NT5 459 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 CDX2Q99626 313 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 MED18Q9BUE0 208 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SERTAD3Q9UJW9 196 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 GNG8Q9UK08 70 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 POU2F3Q9UKI9 436 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ZNF337Q9Y3M9 751 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SIT1Q9Y3P8 196 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 A0A0B4J203 849 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 BLACEA4D250 179 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 DCTN6O00399 190 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 OR7A10O76100 309 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 IL33O95760 270 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 PDGFBP01127 241 aaPredicted RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 IL12BP29460 328 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 GRK6P43250 576 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ACSM1Q08AH1 577 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 EBPQ15125 230 aaKnown RBP9.69□□□□□ -0.86
CUX1-217ENST00000558836 PON3Q15166 354 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 FNDC7Q5VTL7 733 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 HLA-DQA1Q5Y7H0 255 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 WBP2NLQ6ICG8 309 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 D2HGDHQ8N465 521 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ZNF527Q8NB42 609 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SNX33Q8WV41 574 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 DNASE2BQ8WZ79 361 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 AP3S1Q92572 193 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 SLC25A36Q96CQ1 311 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 WDFY2Q96P53 400 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 ACOXLQ9NUZ1 547 aa9.69□□□□□ -0.86
CUX1-217ENST00000558836 FAM25AB3EWG3 89 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 FAM25CB3EWG5 89 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 FAM25GB3EWG6 89 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 C11orf98E9PRG8 122 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 DYRK3O43781 588 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 PLGP00747 810 aaPredicted RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 SPI1P17947 270 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 EPHA4P54764 986 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 CTXN1P60606 82 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 SLC25A35Q3KQZ1 300 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 GUSBP11Q6P575 273 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 ATG4DQ86TL0 474 aaPredicted RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 OR7G1Q8NGA0 311 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 ZNF501Q96CX3 271 aaPredicted RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 SPOCK3Q9BQ16 436 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 C11orf54Q9H0W9 315 aaPredicted RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 SIAEQ9HAT2 523 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 B3GAT2Q9NPZ5 323 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 NRIP3Q9NQ35 241 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 SLC22A11Q9NSA0 550 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 ICAM5Q9UMF0 924 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 TRAPPC4Q9Y296 219 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 TCRBV16S1A1N1A0A5B0 115 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 TVP23AA6NH52 213 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 NDUFB5O43674 189 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 CDC40O60508 579 aaKnown RBP eCLIP9.68□□□□□ -0.86
CUX1-217ENST00000558836 PLCXD2Q0VAA5 305 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 CBX3Q13185 183 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 ELAVL1Q15717 326 aaKnown RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 ZNF74Q16587 644 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 ACSM3Q53FZ2 586 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 DPY19L2P2Q6ZN68 376 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 CMIPQ8IY22 773 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 Q8N402 240 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 IL17RDQ8NFM7 739 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 TAAR8Q969N4 342 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 PMEPA1Q969W9 287 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 PELI1Q96FA3 418 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 PGLYRP3Q96LB9 341 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 RAB33BQ9H082 229 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 INIPQ9NRY2 104 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 RBMX2Q9Y388 322 aaKnown RBP9.68□□□□□ -0.86
CUX1-217ENST00000558836 GPR179Q6PRD1 2367 aa9.68□□□□□ -0.86
CUX1-217ENST00000558836 A0A1B0GX78 115 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms