RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 EXOC3L2Q2M3D2 409 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CTU2Q2VPK5 515 aaKnown RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ZBED5Q49AG3 693 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 EIPR1Q53HC9 387 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 FNDC7Q5VTL7 733 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 TIGD3Q6B0B8 471 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 SLC30A6Q6NXT4 461 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 NPSR1Q6W5P4 371 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 SZRD1Q7Z422 152 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 GALNT5Q7Z7M9 940 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 YRDCQ86U90 279 aaKnown RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 TSPYL5Q86VY4 417 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 NUP43Q8NFH3 380 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 GPR32P1Q8NGA4 272 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 OR1J4Q8NGS1 313 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 NEIL3Q8TAT5 605 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 XAGE5Q8WWM1 108 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 EFHD2Q96C19 240 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 TMCO6Q96DC7 493 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 DHRS1Q96LJ7 313 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 VSTM2LQ96N03 204 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 TUBA1CQ9BQE3 449 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 UBTD1Q9HAC8 227 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ACKR4Q9NPB9 350 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ACER3Q9NUN7 267 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CALML5Q9NZT1 146 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ENOPH1Q9UHY7 261 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 C19orf53Q9UNZ5 99 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 LIPT1Q9Y234 373 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 POFUT2Q9Y2G5 429 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 SH3GLB1Q9Y371 365 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 GMPPBQ9Y5P6 360 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CEPT1Q9Y6K0 416 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 MEGF8Q7Z7M0 2845 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 USF3Q68DE3 2245 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CR1P17927 2039 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 A0A087WV62 115 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 AHRRA9YTQ3 701 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 AHCYL1O43865 530 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GADD45GO95257 159 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 AGR2O95994 175 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 IL2RAP01589 272 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 IL7RP16871 459 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 IL12BP29460 328 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GSTT1P30711 240 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 POLR2IP36954 125 aaKnown RBP11.23□□□□□ -0.61
SHMT2-230ENST00000557427 PTGDSP41222 190 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 RFX3P48380 749 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 PRKAG1P54619 331 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 SRSF2Q01130 221 aaKnown RBP11.23□□□□□ -0.61
SHMT2-230ENST00000557427 IL1RL1Q01638 556 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 FUT5Q11128 374 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 NPRL3Q12980 569 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 CDK5R2Q13319 367 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 LASP1Q14847 261 aaKnown RBP11.23□□□□□ -0.61
SHMT2-230ENST00000557427 WIPI1Q5MNZ9 446 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-230ENST00000557427 OR5M10Q6IEU7 315 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 LAIR2Q6ISS4 152 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GPR141Q7Z602 305 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 LACC1Q8IV20 430 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 OR5D16Q8NGK9 328 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GIMAP5Q96F15 307 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 TMEM41AQ96HV5 264 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 HRASLS5Q96KN8 279 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 MS4A4EQ96PG1 132 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 OR7D2Q96RA2 312 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 PIGQQ9BRB3 760 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 C19orf24Q9BVV8 132 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 ACTRT3Q9BYD9 372 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 VCX3AQ9NNX9 186 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 PAPOLBQ9NRJ5 636 aaKnown RBP11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GIN1Q9NXP7 522 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 QPCTLQ9NXS2 382 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 GALNT8Q9NY28 637 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 PTTG2Q9NZH5 202 aa11.23□□□□□ -0.61
SHMT2-230ENST00000557427 OR6C70A6NIJ9 312 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 DUXAA6NLW8 204 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 RNF223E7ERA6 249 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 J3KTA2 159 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF701M0R085 212 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 SLC1A7O00341 560 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 TSPAN2O60636 221 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 MRPS14O60783 128 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 COQ9O75208 318 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 CCNB2O95067 398 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 OXSR1O95747 527 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 HPNP05981 417 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 CBLP22681 906 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 TCEA1P23193 301 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 CTSSP25774 331 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 GABRA3P34903 492 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 YAP1P46937 504 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 SMIM11AP58511 58 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 PSG6Q00889 435 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 IL5RAQ01344 420 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 EFR3AQ14156 821 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 SVEP1Q4LDE5 3571 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 ATAD3BQ5T9A4 648 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 CDC73Q6P1J9 531 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms