RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RPH3AQ9Y2J0 694 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 RALGAPA1Q6GYQ0 2036 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 DYRK3O43781 588 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PRAMEF2O60811 474 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NKX2-2O95096 273 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MT-ND5P03915 603 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 GLULP15104 373 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CPEP16870 476 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 FBLP22087 321 aaKnown RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MYL9P24844 172 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CDKN2AP42771 156 aaKnown RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CFHR1Q03591 330 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 GFOD2Q3B7J2 385 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 GLYR1Q49A26 553 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PRAMEF20Q5VT98 475 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CARD17Q5XLA6 110 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 FAAP20Q6NZ36 180 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NANOGNBQ7Z5D8 188 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CCDC190Q86UF4 302 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NR2C2APQ86WQ0 139 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TIGD4Q8IY51 512 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC25A45Q8N413 288 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 EID2Q8N6I1 236 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ZBTB8BQ8NAP8 495 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 LSM14AQ8ND56 463 aaKnown RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ABHD4Q8TB40 342 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NKD1Q969G9 470 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC35B4Q969S0 331 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC25A46Q96AG3 418 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ZDHHC12Q96GR4 267 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TCTN2Q96GX1 697 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 OR6C1Q96RD1 312 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 RNF32Q9H0A6 362 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 KCNK15Q9H427 330 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 RANGRFQ9HD47 186 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TRIM36Q9NQ86 728 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MED11Q9P086 117 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC35A3Q9Y2D2 325 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF407Q9C0G0 2248 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 THADAQ6YHU6 1953 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SPTAN1Q13813 2472 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 PRR14LQ5THK1 2151 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 A0A0B4J2E0 115 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 A0A1B0GX12 115 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SAGE2PA6NJ88 616 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 KDM4EB2RXH2 506 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 BHLHE40O14503 412 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TIAF1O95411 115 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 EIF4EP06730 217 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 PIPP12273 146 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 IL11P20809 199 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TALDO1P37837 337 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 CASP3P42574 277 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TSFMP43897 325 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 CXCL12P48061 93 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 GDI2P50395 445 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 EFNA3P52797 238 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 QPRTQ15274 297 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF181Q2M3W8 571 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 C14orf28Q4W4Y0 310 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ALG10Q5BKT4 473 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TMEM201Q5SNT2 666 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 GUSBP11Q6P575 273 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ULK3Q6PHR2 472 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SLC35F2Q8IXU6 374 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 PM20D2Q8IYS1 436 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 GJD3Q8N144 294 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 OR4M1Q8NGD0 313 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 OR10AC1Q8NH08 325 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SLC2A12Q8TD20 617 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 THAP4Q8WY91 577 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SLC39A7Q92504 469 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 NSMAFQ92636 917 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 CCDC74AQ96AQ1 378 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 C3orf49Q96BT1 292 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 C5orf34Q96MH7 638 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 NECAB3Q96P71 396 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 DERL3Q96Q80 235 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 WDR76Q9H967 626 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF304Q9HCX3 659 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 MCUBQ9NWR8 336 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 CCDC59Q9P031 241 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF223Q9UK11 482 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 GMEB1Q9Y692 573 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 IQCMA0A1B0GVH7 501 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 MEIOCA2RUB1 952 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ARRDC5A6NEK1 342 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 OR6C70A6NIJ9 312 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TAF4O00268 1085 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 ZNHIT1O43257 154 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 CHP2O43745 196 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SRPX2O60687 465 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 PIAS2O75928 621 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 TOXO94900 526 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 MPZL1O95297 269 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 SPARCP09486 303 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 UBL4AP11441 157 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 FOSL2P15408 326 aa5.11□□□□□ -1.59
LIMA1-215ENST00000552823 NME1P15531 152 aaKnown RBP5.11□□□□□ -1.59
LIMA1-215ENST00000552823 PRKCAP17252 672 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms