RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 OR52E2Q8NGJ4 325 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR52B4Q8NGK2 314 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF671Q8TAW3 534 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZPLD1Q8TCW7 415 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 RGP1Q92546 391 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CNOT9Q92600 299 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 RIT1Q92963 219 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ELMOD3Q96FG2 381 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TOE1Q96GM8 510 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LCORQ96JN0 433 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR1F2PQ96R84 312 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF559Q9BR84 538 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 GPR174Q9BXC1 333 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 HDAC8Q9BY41 377 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 AKAP7Q9P0M2 348 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 HCN3Q9P1Z3 774 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MGAT4CQ9UBM8 478 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 KIF25Q9UIL4 384 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF346Q9UL40 294 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ICAM5Q9UMF0 924 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ADAM18Q9Y3Q7 739 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 KNL1Q8NG31 2342 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TRBV2A0A0J9YWF9 115 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 hCG_1807616A0A1W2PRN6 198 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR2M5A3KFT3 312 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 NAP1L6A6NFF2 107 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MFSD2BA6NFX1 497 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 RIIAD1A6NNX1 92 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 C4orf47A7E2U8 309 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LGALS8O00214 317 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 GNB5O14775 395 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TSPAN4O14817 238 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF749O43361 778 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SELENOFO60613 162 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ECDO95905 644 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CT62P0C5K7 136 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LAMP2P13473 410 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF3P17036 446 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TYRP1P17643 537 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ATF4P18848 351 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MAT2AP31153 395 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 EMDP50402 254 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PPP2CBP62714 309 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PPP2CAP67775 309 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TNFRSF17Q02223 184 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 POU4F2Q12837 409 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 KRT33BQ14525 404 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 EXOSC7Q15024 291 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 C2orf27AQ580R0 203 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 UBE2NLQ5JXB2 153 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 EXOSC6Q5RKV6 272 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 METTL11BQ5VVY1 283 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 FBXO42Q6P3S6 717 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 FAM198BQ6UWH4 519 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 UNQ9370/PRO34162Q6UXP9 181 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PRSS41Q7RTY9 318 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 UBE2Q1Q7Z7E8 422 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 STPG2Q8N412 459 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MRPL43Q8N983 215 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 FAM71CQ8NEG0 241 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR4E2Q8NGC2 313 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR4C6Q8NH72 309 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MOSPD2Q8NHP6 518 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LHFPL5Q8TAF8 219 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SIPA1Q96FS4 1042 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CAPNS2Q96L46 248 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 RAB11FIP5Q9BXF6 653 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SEMA4CQ9C0C4 833 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PLEKHA1Q9HB21 404 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 NRIP3Q9NQ35 241 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SDHAF2Q9NX18 166 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 DEC1Q9P2X7 70 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 GNG8Q9UK08 70 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CA5BQ9Y2D0 317 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MRPS2Q9Y399 296 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 MED31Q9Y3C7 131 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 A0A0B4J2E0 115 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1B0GTQ1 180 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1B0GUH1 482 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1B0GWA3 101 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1B0GX12 115 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 TCRBV16S1A1N1A0A5B0 115 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 IFITM5A6NNB3 132 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 FAM171A2A8MVW0 826 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 MCRIP1C9JLW8 97 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 MCIDASD6RGH6 385 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 GALR3O60755 368 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-212ENST00000552491 FMO6PO60774 539 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 CTSVO60911 334 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 PPM1BO75688 479 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 SIX6O95475 246 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 ADH1CP00326 375 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 CD1AP06126 327 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 LPLP06858 475 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 DBIP07108 87 aaKnown RBP4.97□□□□□ -1.61
LIMA1-212ENST00000552491 NMBP08949 121 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 CPMP14384 443 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 CTRB1P17538 263 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 SRMP19623 302 aa4.97□□□□□ -1.61
LIMA1-212ENST00000552491 EDNRAP25101 427 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms