RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRHRP34981 398 aaPredicted RBP13.83□□□□□ -0.19
CUX1-214ENST00000550008 DUSP3P51452 185 aaPredicted RBP13.83□□□□□ -0.19
CUX1-214ENST00000550008 GOT1L1Q8NHS2 421 aaPredicted RBP13.83□□□□□ -0.19
CUX1-214ENST00000550008 GPR148Q8TDV2 347 aa13.83□□□□□ -0.19
CUX1-214ENST00000550008 ULBP3Q9BZM4 244 aa13.83□□□□□ -0.19
CUX1-214ENST00000550008 L7N2F9 121 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 LIPCP11150 499 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 POU3F4P49335 361 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 GLO1Q04760 184 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 SPOCK1Q08629 439 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 CBFBQ13951 182 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 ARHGAP11BQ3KRB8 267 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 FAM27D1Q5T7N8 215 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 LYSMD2Q8IV50 215 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 C8orf44Q96CB5 159 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 ORAI1Q96D31 301 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 BCL2L10Q9HD36 194 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 HPF1Q9NWY4 346 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 MEN1O00255 615 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 CHP2O43745 196 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 OR2T1O43869 369 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 MT-ND4P03905 459 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 SLC6A8P48029 635 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 UEVLDQ8IX04 471 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 ALDH16A1Q8IZ83 802 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 OR13C5Q8NGS8 318 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.83□□□□□ -0.2
CUX1-214ENST00000550008 FAM60AQ9NP50 221 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 TATDN3Q17R31 274 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 CDNFQ49AH0 187 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 LRRN1Q6UXK5 716 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 OR14L1PQ8NHC6 308 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 ABHD4Q8TB40 342 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 OPALINQ96PE5 141 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 HIST1H2AAQ96QV6 131 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 SLC52A3Q9NQ40 469 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 SIRT3Q9NTG7 399 aaPredicted RBP13.83□□□□□ -0.2
CUX1-214ENST00000550008 GPATCH2Q9NW75 528 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 MGAT4CQ9UBM8 478 aa13.83□□□□□ -0.2
CUX1-214ENST00000550008 CXorf51AA0A1B0GTR3 108 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 SULT2B1O00204 365 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 HRO43593 1189 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 GSTT2P0CG29 244 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 ENDOUP21128 410 aaKnown RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 SIRPAP78324 504 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 PYHIN1Q6K0P9 492 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 LINC00346Q8IVM7 164 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 LRRC61Q9BV99 259 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.82□□□□□ -0.21e-6■■□□□ 13.1
CUX1-214ENST00000550008 NXF5Q9H1B4 397 aaKnown RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 ZNF701Q9NV72 531 aaPredicted RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 VSX1Q9NZR4 365 aaPredicted RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 ZNF639Q9UID6 485 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 PSME4Q14997 1843 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 ZNF208O43345 1280 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 SUSD5O60279 629 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 RBMXL2O75526 392 aaKnown RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 KDM4BO94953 1096 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 HIST1H1CP16403 213 aaKnown RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 EMDP50402 254 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 PRKCDQ05655 676 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 GLYR1Q49A26 553 aaPredicted RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 POGLUT1Q8NBL1 392 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 PLCXD1Q9NUJ7 323 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 MED11Q9P086 117 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 GSKIPQ9P0R6 139 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 B3GNT3Q9Y2A9 372 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 ABCA7Q8IZY2 2146 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 LDOC1O95751 146 aaPredicted RBP13.82□□□□□ -0.2
CUX1-214ENST00000550008 NUDT1P36639 197 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 RAB11BQ15907 218 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 OCLNQ16625 522 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 SIMC1Q8NDZ2 872 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 FAM174AQ8TBP5 190 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 GAREM1Q9H706 876 aa13.82□□□□□ -0.2
CUX1-214ENST00000550008 A6NL46 340 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 ANXA3P12429 323 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 APEHP13798 732 aaKnown RBP13.81□□□□□ -0.2
CUX1-214ENST00000550008 SLC2A5P22732 501 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 E2F1Q01094 437 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 HTR4Q13639 388 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 CCINQ13939 588 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 TMEM176BQ3YBM2 270 aaPredicted RBP13.81□□□□□ -0.2
CUX1-214ENST00000550008 OR5M1Q8NGP8 315 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 TMEM106AQ96A25 262 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 OR11A1Q9GZK7 315 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 ING1Q9UK53 422 aaPredicted RBP13.81□□□□□ -0.2
CUX1-214ENST00000550008 I3L521 148 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 LRRTM2O43300 516 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 SYT7O43581 403 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 SBK2P0C263 348 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 FNTBP49356 437 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 SMCO1Q147U7 214 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 PCGF3Q3KNV8 242 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 AGAP6Q5VW22 663 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 ZNF584Q8IVC4 421 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 OR2T35Q8NGX2 323 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 SYNPRQ8TBG9 265 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 AGAP4Q96P64 663 aa13.81□□□□□ -0.2
CUX1-214ENST00000550008 OR2A5Q96R48 311 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms