RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 OR4F15Q8NGB8 312 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 PPP1R35Q8TAP8 253 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 MAGOHBQ96A72 148 aaKnown RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 RAB39BQ96DA2 213 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 ERP27Q96DN0 273 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 KTI12Q96EK9 354 aaPredicted RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 TSPAN17Q96FV3 270 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 OTUB1Q96FW1 271 aaPredicted RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 AURKBQ96GD4 344 aaPredicted RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 RAX2Q96IS3 184 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 ARL5BQ96KC2 179 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 WWC2-AS2Q96NR7 200 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 FRG2BQ96QU4 278 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 SLC30A2Q9BRI3 323 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 DESI2Q9BSY9 194 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 NAT9Q9BTE0 207 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 KATNB1Q9BVA0 655 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 SSBP4Q9BWG4 385 aaPredicted RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 RACGAP1Q9H0H5 632 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 ELOVL6Q9H5J4 265 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 NOL11Q9H8H0 719 aaKnown RBP4.08□□□□□ -1.76
LIMS1-214ENST00000542845 POPDC3Q9HBV1 291 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 CRLF2Q9HC73 371 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 SLC35C2Q9NQQ7 365 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 GIN1Q9NXP7 522 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 PLEK2Q9NYT0 353 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 UBAP1Q9NZ09 502 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 FBLN5Q9UBX5 448 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 GPR160Q9UJ42 338 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 FZR1Q9UM11 496 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 TSC22D4Q9Y3Q8 395 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 CMAHPQ9Y471 501 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 RNF114Q9Y508 228 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 MMP24Q9Y5R2 645 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 AUP1Q9Y679 476 aa4.08□□□□□ -1.76
LIMS1-214ENST00000542845 WNK2Q9Y3S1 2297 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 A0A096LPK6 155 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ISPDA4D126 451 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF716A6NP11 495 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 M0R233 179 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 UPK1AO00322 258 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SYNGR3O43761 229 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MPIG6BO95866 241 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 LGI1O95970 557 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 NGFP01138 241 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 PDYNP01213 254 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 FSHBP01225 129 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CECR9P0C854 216 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 RHCEP18577 417 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CCNA2P20248 432 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MPGP29372 298 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GP5P40197 560 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MAGEA8P43361 318 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CAPZA2P47755 286 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MTNR1AP48039 350 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ATP4BP51164 291 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 P2RX1P51575 399 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 LGALS4P56470 323 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 OR2B6P58173 313 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CSNK2A1P68400 391 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CCL8P80075 99 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 C2orf80Q0P641 193 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GALNT1Q10472 559 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 DLG1Q12959 904 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SELENBP1Q13228 472 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SNTB2Q13425 540 aaKnown RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 HEPACAMQ14CZ8 416 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GLIPR1L2Q4G1C9 344 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 TIGD2Q4W5G0 525 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 KLF17Q5JT82 389 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CCNJQ5T5M9 372 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CCDC137Q6PK04 289 aaKnown RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 TMPPEQ6ZT21 453 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ISCA2Q86U28 154 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MYPOPQ86VE0 399 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 LRP11Q86VZ4 500 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SAMD14Q8IZD0 417 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 L3MBTL4Q8NA19 623 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 FAM156AQ8NDB6 213 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GPR119Q8TDV5 335 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ST7LQ8TDW4 575 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SELENOMQ8WWX9 145 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ARL8AQ96BM9 186 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF524Q96C55 264 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ZHX1-C8orf76Q96EF9 292 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GAL3ST1Q99999 423 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF416Q9BWM5 594 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MRPL37Q9BZE1 423 aaKnown RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 RHOJQ9H4E5 214 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MARCH7Q9H992 704 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 NMRAL1Q9HBL8 299 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 HHATLQ9HCP6 504 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 UBQLN4Q9NRR5 601 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SERINC1Q9NRX5 453 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 TMEM45AQ9NWC5 275 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 PARPBPQ9NWS1 579 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 AURKAIP1Q9NWT8 199 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 GAR1Q9NY12 217 aaKnown RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 C1RLQ9NZP8 487 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 CPSF2Q9P2I0 782 aaKnown RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms