RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CA10Q9NS85 328 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 KCNS2Q9ULS6 477 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 CHST2Q9Y4C5 530 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 PMF1-BGLAPU3KQ54 211 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 A0A096LPE4 126 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 A0A1W2PPZ6 126 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 AQP7P3A6NL99 342 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 EIF1BO60739 113 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 AGR2O95994 175 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 CECR9P0C854 216 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 APEHP13798 732 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 ACAA2P42765 397 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 PRPS1P60891 318 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 UFM1P61960 85 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 VSNL1P62760 191 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 CHI3L2Q15782 390 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 SMU1Q2TAY7 513 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 VHLLQ6RSH7 139 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF836Q6ZNA1 936 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 SPATA19Q7Z5L4 167 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 GPAT4Q86UL3 456 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 VRK2Q86Y07 508 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 NUDCD3Q8IVD9 361 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 CCDC115Q96NT0 180 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 TRNT1Q96Q11 434 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 SLC38A2Q96QD8 506 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 VRK1Q99986 396 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 NAA11Q9BSU3 229 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 NUF2Q9BZD4 464 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 SEC14L4Q9UDX3 406 aa13.44□□□□□ -0.26
CLSTN3-213ENST00000541953 CFAP73A6NFT4 308 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 E9PBE3 544 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 FAAHO00519 579 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 FRS3O43559 492 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 UPK3AO75631 287 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 OR4A8P0C604 315 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 HTR3AP46098 478 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 SNRPD2P62316 118 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 HPCAP84074 193 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 CR1LQ2VPA4 569 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 ANXA8L1Q5VT79 327 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 LRRC74BQ6ZQY2 392 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 SLC46A3Q7Z3Q1 461 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 EPHX4Q8IUS5 362 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 KDM8Q8N371 416 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 BCL2L2Q92843 193 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 BOD1Q96IK1 185 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 PNPOQ9NVS9 261 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 PARPBPQ9NWS1 579 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 ADPRHL2Q9NX46 363 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 FKBP7Q9Y680 259 aa13.43□□□□□ -0.26
CLSTN3-213ENST00000541953 CCDC154A6NI56 674 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 TGFAP01135 160 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 SERPINE1P05121 402 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 FKBP2P26885 142 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 THBS2P35442 1172 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 SERPINF1P36955 418 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 MVDP53602 400 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 ABCE1P61221 599 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 NAAAQ02083 359 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 TGFBR3Q03167 851 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 HGFACQ04756 655 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 MPP2Q14168 576 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 RPS26P11Q5JNZ5 115 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 KLHL24Q6TFL4 600 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 CREB3L2Q70SY1 520 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 HOMEZQ8IX15 550 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 CMIPQ8IY22 773 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 CADM2Q8N3J6 435 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF837Q96EG3 531 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 ZIM3Q96PE6 472 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 RSPO3Q9BXY4 272 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 CRNNQ9UBG3 495 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 BTNL2Q9UIR0 455 aa13.42□□□□□ -0.26
CLSTN3-213ENST00000541953 DSPPQ9NZW4 1301 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 LOC390937A0A1W2PQ73 354 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 CDHR4A6H8M9 788 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 HAX1O00165 279 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 NDUFS8O00217 210 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 LILRA1O75019 489 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 WNT11O96014 354 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 IGLV1-44P01699 117 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 GPIP06744 558 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 BMP4P12644 408 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 IL7RP16871 459 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF23P17027 643 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 BGNP21810 368 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 S100A3P33764 101 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 TRIP10Q15642 601 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 ZSWIM7Q19AV6 140 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 MSMPQ1L6U9 139 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 GTDC1Q4AE62 458 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 ANKRD16Q6P6B7 361 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 CLIP4Q8N3C7 705 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 POMGNT2Q8NAT1 580 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 PMM1Q92871 262 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 KATNB1Q9BVA0 655 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 SF3B5Q9BWJ5 86 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 PLK3Q9H4B4 646 aa13.41□□□□□ -0.26
CLSTN3-213ENST00000541953 RAP2CQ9Y3L5 183 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms