RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 TMEM99Q8N816 258 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 OR5M1Q8NGP8 315 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 LIPHQ8WWY8 451 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 CRELD1Q96HD1 420 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 MGLLQ99685 303 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 KATNB1Q9BVA0 655 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 OR51E2Q9H255 320 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 OR51V1Q9H2C8 321 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 METTL7AQ9H8H3 244 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 GPN2Q9H9Y4 310 aaPredicted RBP11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 NRIP3Q9NQ35 241 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 HIF3AQ9Y2N7 669 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 WIF1Q9Y5W5 379 aa11.12□□□□□ -0.63
AP003559.1-201ENST00000540906 KNTC1P50748 2209 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 IGF2P01344 180 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 TSPAN19P0C672 248 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 CCL3P10147 92 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 RPL4P36578 427 aaKnown RBP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 MLF1P58340 268 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 RPL18Q07020 188 aaKnown RBP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 C17orf67Q0P5P2 114 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 RAB40BQ12829 278 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 KLHL12Q53G59 568 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 RNLSQ5VYX0 342 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 MEPCEQ7L2J0 689 aaKnown RBP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 FAM122BQ7Z309 247 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 GRINAQ7Z429 371 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 LHFPL3Q86UP9 236 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 ATCAYQ86WG3 371 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 MISPQ8IVT2 679 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 WDSUB1Q8N9V3 476 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNF485Q8NCK3 441 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 OR51L1Q8NGJ5 315 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 OR51G2Q8NGK0 314 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 TM9SF4Q92544 642 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 Q96M85 177 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 TIMP4Q99727 224 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 NANSQ9NR45 359 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 IL17BQ9UHF5 180 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNF346Q9UL40 294 aaKnown RBP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 EXOGQ9Y2C4 368 aaKnown RBP11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 DMXL1Q9Y485 3027 aa11.11□□□□□ -0.63
AP003559.1-201ENST00000540906 PTPRZ1P23471 2315 aaPredicted RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 TRAV36DV7A0A075B6V5 113 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 IGLV3-32A0A0A0MS00 114 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 PRR23D1E9PI22 279 aaPredicted RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 LALBAP00709 142 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 MRPL3P09001 348 aaKnown RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 FTH1P19P0C7X4 201 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 PRR23D2P0DMB1 279 aaPredicted RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 HK1P19367 917 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 DLSTP36957 453 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 CDKN2AP42771 156 aaKnown RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 RGS6P49758 472 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 C19orf57Q0VDD7 668 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 KLHL22Q53GT1 634 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 ARHGAP11AQ6P4F7 1023 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 LYPD4Q6UWN0 246 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 DPY19L2P2Q6ZN68 376 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 ALDH16A1Q8IZ83 802 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 GALNT15Q8N3T1 639 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 RFLNBQ8N5W9 214 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 NPEPL1Q8NDH3 523 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 OR2M3Q8NG83 312 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 SLC25A36Q96CQ1 311 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 TRMT61AQ96FX7 289 aaKnown RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 GPX7Q96SL4 187 aaPredicted RBP11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 NMNAT3Q96T66 252 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 TEX12Q9BXU0 123 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 SH2D2AQ9NP31 389 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 ANKRD10Q9NXR5 420 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 TAS2R5Q9NYW4 299 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 PPP4R1LQ9P1A2 415 aa11.1□□□□□ -0.63
AP003559.1-201ENST00000540906 MED12Q93074 2177 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 DOCK10Q96BY6 2186 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 TEX13CA0A0J9YWL9 993 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 OR6C68A6NDL8 312 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 RIIAD1A6NNX1 92 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 RAD1O60671 282 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 SERPINI2O75830 405 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 IGHEP01854 428 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 IGHA1P01876 353 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 ENDOUP21128 410 aaKnown RBP11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 TMED10P49755 219 aaKnown RBP11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 LIMK1P53667 647 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 SSPNQ14714 243 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 SPHARQ15513 63 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 PLPPR5Q32ZL2 321 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 C1orf140Q5VVS0 124 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 C19orf48Q6RUI8 117 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 RPS19BP1Q86WX3 136 aaKnown RBP11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 WDFY1Q8IWB7 410 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 SLC15A4Q8N697 577 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 FAM98AQ8NCA5 519 aaKnown RBP11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 ATP6V1C2Q8NEY4 427 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 PROKR2Q8NFJ6 384 aa11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 NLGN4YQ8NFZ3 816 aaPredicted RBP11.09□□□□□ -0.63
AP003559.1-201ENST00000540906 NTNG2Q96CW9 530 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms