RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ANKDD1AQ495B1 522 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 FBXW10Q5XX13 1052 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ARHGAP11AQ6P4F7 1023 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 TTC33Q6PID6 262 aaPredicted RBP9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF730Q6ZMV8 503 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF620Q6ZNG0 422 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 Q6ZPB1 254 aaPredicted RBP9.46□□□□□ -0.9
VPS33A-204ENST00000540669 TMPPEQ6ZT21 453 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZDHHC13Q8IUH4 622 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 P3H2Q8IVL5 708 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 LRRC75AQ8NAA5 344 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 AQP11Q8NBQ7 271 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 OR52J3Q8NH60 311 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 PIGXQ8TBF5 258 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 CPT1CQ8TCG5 803 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 GIPC3Q8TF64 312 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 DDIT4LQ96D03 193 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 BPIFA2Q96DR5 249 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 RDH12Q96NR8 316 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 GPX7Q96SL4 187 aaPredicted RBP9.46□□□□□ -0.9
VPS33A-204ENST00000540669 FEVQ99581 238 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 TIMP4Q99727 224 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 SLC29A1Q99808 456 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 CIB1Q99828 191 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 GABARAPL3Q9BY60 117 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 KLHL4Q9C0H6 718 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 SEMA6AQ9H2E6 1030 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 SERINC1Q9NRX5 453 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ALKBH4Q9NXW9 302 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 MRPL39Q9NYK5 338 aaKnown RBP9.46□□□□□ -0.9
VPS33A-204ENST00000540669 B3GAT1Q9P2W7 334 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 CLCF1Q9UBD9 225 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 STOML1Q9UBI4 398 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF229Q9UJW7 825 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 MGAT4BQ9UQ53 548 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 SIGLEC7Q9Y286 467 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF835Q9Y2P0 537 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 HIVEP3Q5T1R4 2406 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 PHF3Q92576 2039 aaKnown RBP9.46□□□□□ -0.9
VPS33A-204ENST00000540669 ZGRF1Q86YA3 2104 aa9.46□□□□□ -0.9
VPS33A-204ENST00000540669 SAC3D1A6NKF1 404 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF814B7Z6K7 855 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 LRRN3E7EW58 273 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 G3V2T6 193 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 H0YJX3 145 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 PDLIM1O00151 329 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SMAD9O15198 467 aaKnown RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 OR2T1O43869 369 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 PTP4A3O75365 173 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 AHSA1O95433 338 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 GASTP01350 101 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ANXA8P13928 327 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF23P17027 643 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 POU3F2P20265 443 aaPredicted RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 PTNP21246 168 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 IDUAP35475 653 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 DIO1P49895 249 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ALDH3A2P51648 485 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SLC16A1P53985 500 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 POU4F3Q15319 338 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 GUSBP1Q15486 140 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 TRIP10Q15642 601 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SGCBQ16585 318 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 KRTCAP3Q53RY4 240 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 PAQR6Q6TCH4 344 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 KLHL17Q6TDP4 642 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 RASSF6Q6ZTQ3 369 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 KIF18BQ86Y91 864 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 MED12LQ86YW9 2145 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 GHDCQ8N2G8 530 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SLC43A2Q8N370 569 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 CBR4Q8N4T8 237 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 OR8D4Q8NGM9 314 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 OR2V1Q8NHB1 315 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ABTB1Q969K4 478 aaPredicted RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SGTBQ96EQ0 304 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 FAM46AQ96IP4 442 aaKnown RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 NIPSNAP1Q9BPW8 284 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 C9orf16Q9BUW7 83 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SRXN1Q9BYN0 137 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 DEFB127Q9H1M4 99 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 TSPAN10Q9H1Z9 355 aaPredicted RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 TMEM185BQ9H7F4 350 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 MCCC2Q9HCC0 563 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ASF1BQ9NVP2 202 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 IL20Q9NYY1 176 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 SELENONQ9NZV5 590 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 PDP1Q9P0J1 537 aaPredicted RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 ING1Q9UK53 422 aaPredicted RBP9.45□□□□□ -0.9
VPS33A-204ENST00000540669 TMCC3Q9ULS5 477 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 CORINQ9Y5Q5 1042 aa9.45□□□□□ -0.9
VPS33A-204ENST00000540669 RELNP78509 3460 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 MYO18BQ8IUG5 2567 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 IGKV3D-15A0A087WSY6 115 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 A0A1W2PNR3 127 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 AQP7P3A6NL99 342 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 GJE1A6NN92 205 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF716A6NP11 495 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 NPIPA5E9PKD4 350 aa9.44□□□□□ -0.9
VPS33A-204ENST00000540669 H3BML4 177 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms